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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = CTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.477213 (29 seq.)
>WENV182826595
OKCT01000022
[OKCT] human gut metagenome; human gut
72170
72095
-
Gln
CTG
[ENA]
¢þ
>WENV182827494
OKDA01000001
[OKDA] human gut metagenome; human gut
68083
68008
-
Gln
CTG
[ENA]
¢þ
>WENV182837012
OKGB01000001
[OKGB] human gut metagenome; human gut
44179
44254
+
Gln
CTG
[ENA]
¢þ
>WENV182851097
OKLK01000001
[OKLK] human gut metagenome; human gut
30620
30545
-
Gln
CTG
[ENA]
¢þ
>WENV183778384
PPYF01120176
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1370
1445
+
Gln
CTG
[ENA]
¢þ
>WENV183784651
PPYF01267234
[PPYF] human gut metagenome; stool from patient with Crohn's disease
17323
17398
+
Gln
CTG
[ENA]
¢þ
>PHG0100052
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
28990
29065
+
Gln
CTG
[ENA]
¡û
>PHG181000838
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
61778
61703
-
Gln
CTG
[ENA]
¡û
>PHG181001028
KP869100
Myoviridae
Escherichia typing phage 1 (KP869100)
11388
11313
-
Gln
CTG
[ENA]
¡û
>PHG181001070
KP869106
Myoviridae
Escherichia coli O157 typing phage 8 (KP869106)
49216
49291
+
Gln
CTG
[ENA]
¡û
>PHG181001092
KP869109
Myoviridae
Escherichia coli O157 typing phage 11 (KP869109)
28396
28471
+
Gln
CTG
[ENA]
¡û
>PHG181001106
KP869110
Myoviridae
Escherichia coli O157 typing phage 12 (KP869110)
85857
85782
-
Gln
CTG
[ENA]
¡û
>PHG181001136
KP869113
Myoviridae
Escherichia coli O157 typing phage 15 (KP869113)
28856
28781
-
Gln
CTG
[ENA]
¡û
>PHG181003219
KX377933
Myoviridae
Escherichia phage vB_EcoM_Alf5 (KX377933)
28270
28345
+
Gln
CTG
[ENA]
¡û
>PHG181003317
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
15297
15372
+
Gln
CTG
[ENA]
¡û
>PHG181004221
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
5208
5283
+
Gln
CTG
[ENA]
¡û
>PHG181005559
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
27048
27123
+
Gln
CTG
[ENA]
¡û
>PHG181006731
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
26306
26381
+
Gln
CTG
[ENA]
¡û
>PHG181006747
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
26339
26414
+
Gln
CTG
[ENA]
¡û
>PHG181007020
MG646672
Myoviridae
Salmonella phage BPS17L1 (MG646672)
70101
70026
-
Gln
CTG
[ENA]
¡û
>PHG181007449
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
14419
14494
+
Gln
CTG
[ENA]
¡û
>PHG181007463
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
101135
101210
+
Gln
CTG
[ENA]
¡û
>PHG181007476
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
77943
77868
-
Gln
CTG
[ENA]
¡û
>PHG181007489
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
39431
39356
-
Gln
CTG
[ENA]
¡û
>PHG14100088
EU877232
Myoviridae
Escherichia phage wV8 N4 (EU877232)
30366
30441
+
Gln
CTG
[ENA]
¡û
>PHG14100861
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
28912
28987
+
Gln
CTG
[ENA]
¡û
>PHG14101084
JN225449
Myoviridae
Enterobacteriaphage UAB_Phi87 Sebata (JN225449)
87100
87025
-
Gln
CTG
[ENA]
¡û
>PHG14101838
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
12833
12908
+
Gln
CTG
[ENA]
¡û
>PHG14101851
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
50429
50354
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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