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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = GAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.667846 (32 seq.)
>WENV180209927
OBAL01042765
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
462
536
+
Ile
GAT
[ENA]
¢þ
>WENV180379461
OBOP01034713
[OBOP] marine metagenome; water
35
109
+
Ile
GAT
[ENA]
¢þ
>WENV181193322
OEQM01000020
[OEQM] metagenome; water of meat washing
69983
69909
-
Ile
GAT
[ENA]
¢þ
>WENV181195600
OEQT01009182
[OEQT] metagenome; water of meat washing
349
423
+
Ile
GAT
[ENA]
¢þ
>WENV181198146
OERD01000215
[OERD] metagenome; water of meat washing
16406
16480
+
Ile
GAT
[ENA]
¢þ
>WENV181199425
OERH01000408
[OERH] metagenome; water of meat washing
1011
1085
+
Ile
GAT
[ENA]
¢þ
>WENV181200209
OERJ01006501
[OERJ] metagenome; water of meat washing
73
-1
-
Ile
GAT
[ENA]
¢þ
>WENV181200458
OERK01009353
[OERK] metagenome; water of meat washing
446
520
+
Ile
GAT
[ENA]
¢þ
>WENV181201490
OERO01001038
[OERO] metagenome; water of meat washing
1210
1136
-
Ile
GAT
[ENA]
¢þ
>WENV182520491
OIWQ01001088
[OIWQ] human gut metagenome; faeces
15326
15400
+
Ile
GAT
[ENA]
¢þ
>WENV183784642
PPYF01267234
[PPYF] human gut metagenome; stool from patient with Crohn's disease
14841
14915
+
Ile
GAT
[ENA]
¢þ
>WENV183791951
PPYF01442932
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1985
1911
-
Ile
GAT
[ENA]
¢þ
>WENV170560502
CYGL01003348
[CYGL] human gut metagenome;
1958
1884
-
Ile
GAT
[ENA]
¢þ
>PHG181000774
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
27920
27994
+
Ile
GAT
[ENA]
¡û
>PHG181000829
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
64257
64183
-
Ile
GAT
[ENA]
¡û
>PHG181003307
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
12313
12387
+
Ile
GAT
[ENA]
¡û
>PHG181004214
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
3470
3544
+
Ile
GAT
[ENA]
¡û
>PHG181005050
MF158043
Myoviridae
Shigella phage Sf16 (MF158043)
17454
17528
+
Ile
GAT
[ENA]
¡û
>PHG181005070
MF158044
Myoviridae
Shigella phage Sf18 (MF158044)
67760
67834
+
Ile
GAT
[ENA]
¡û
>PHG181005549
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
24210
24284
+
Ile
GAT
[ENA]
¡û
>PHG181006721
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
23827
23901
+
Ile
GAT
[ENA]
¡û
>PHG181006737
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
23860
23934
+
Ile
GAT
[ENA]
¡û
>PHG181007455
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
98666
98740
+
Ile
GAT
[ENA]
¡û
>PHG181007470
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
80415
80341
-
Ile
GAT
[ENA]
¡û
>PHG181007481
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
41898
41824
-
Ile
GAT
[ENA]
¡û
>PHG14100323
GU169904
Myoviridae
Staphylococcus phage SA1 B11 (GU169904)
59206
59280
+
Ile
GAT
[ENA]
¡û
>PHG14101830
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
10353
10427
+
Ile
GAT
[ENA]
¡û
>PHG14101843
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
52909
52835
-
Ile
GAT
[ENA]
¡û
>PHG14101950
JX560968
Myoviridae
Escherichia phage EC6 JBD67 (JX560968)
13183
13257
+
Ile
GAT
[ENA]
¡û
>PHG14102502
KF055347
Myoviridae
Escherichia phage JH2 phi47:1 (KF055347)
73357
73283
-
Ile
GAT
[ENA]
¡û
>PHG14103315
KM657822
Myoviridae
Escherichia phage vB_EcoM-VpaE1 DSS3-P1 (KM657822)
26743
26817
+
Ile
GAT
[ENA]
¡û
>W1810333667
PURB01000035
Gammaproteobacteria
Escherichia coli KOS_SD04_1507_Eco_073 [PURB]
18786
18712
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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