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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = GCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512900 (13 seq.)
>WENV180380369
OBOQ01038025
[OBOQ] marine metagenome; Fridge
425
350
-
Cys
GCA
[ENA]
¢þ
>WENV182536960
OIXH01002422
[OIXH] human gut metagenome; faeces
15644
15719
+
Cys
GCA
[ENA]
¢þ
>PHG0100012
AF071201
Myoviridae
Salmonella phage FelixO1 phi-Xv (AF071201)
1004
1079
+
Cys
GCA
[ENA]
¡û
>PHG0100054
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
30105
30180
+
Cys
GCA
[ENA]
¡û
>PHG181000841
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
60664
60589
-
Cys
GCA
[ENA]
¡û
>PHG181003222
KX377933
Myoviridae
Escherichia phage vB_EcoM_Alf5 (KX377933)
29384
29459
+
Cys
GCA
[ENA]
¡û
>PHG181004224
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
6323
6398
+
Cys
GCA
[ENA]
¡û
>PHG181007465
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
102248
102323
+
Cys
GCA
[ENA]
¡û
>PHG181007478
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
76830
76755
-
Cys
GCA
[ENA]
¡û
>PHG14100863
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
30027
30102
+
Cys
GCA
[ENA]
¡û
>PHG14101840
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
13947
14022
+
Cys
GCA
[ENA]
¡û
>PHG14101853
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
49315
49240
-
Cys
GCA
[ENA]
¡û
>PHG14103327
KM657822
Myoviridae
Escherichia phage vB_EcoM-VpaE1 DSS3-P1 (KM657822)
30245
30320
+
Cys
GCA
[ENA]
¡û
Identical group No.720161 (1 seq.)
>PHG14101941
JX483881
unclassified bacterial viruses
Rhizobium phage RHEph10 S-CAM20 (JX483881)
60708
60782
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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