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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232736 (4 seq.)
>PHG181008107
MH370370
Ackermannviridae
Salmonella phage S117 (MH370370)
138701
138782
+
Tyr
GTA
[ENA]
¡û
>PHG14100147
FQ312032
Ackermannviridae
Salmonella virus ViI phi 2 (FQ312032)
138314
138395
+
Tyr
GTA
[ENA]
¡û
>PHG14102785
KJ174318
Ackermannviridae
Salmonella phage vB_SalM_SJ3 VD13 (KJ174318)
81962
81881
-
Tyr
GTA
[ENA]
¡û
>PHG14103151
KM389299
unclassified bacterial viruses
Escherichia phage CBA6 (KM389299)
4750
4831
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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