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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = TAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235372 (54 seq.)
>WENV180472290
OBYQ01000180
[OBYQ] human gut metagenome; faeces
18243
18321
+
Leu
TAA
[ENA]
¢þ
>WENV181193331
OEQM01000020
[OEQM] metagenome; water of meat washing
67674
67596
-
Leu
TAA
[ENA]
¢þ
>WENV181198165
OERD01000283
[OERD] metagenome; water of meat washing
1
79
+
Leu
TAA
[ENA]
¢þ
>WENV181199434
OERH01000408
[OERH] metagenome; water of meat washing
3317
3395
+
Leu
TAA
[ENA]
¢þ
>WENV181200441
OERK01007367
[OERK] metagenome; water of meat washing
632
554
-
Leu
TAA
[ENA]
¢þ
>WENV181201570
OERO01005642
[OERO] metagenome; water of meat washing
320
398
+
Leu
TAA
[ENA]
¢þ
>WENV182520502
OIWQ01001088
[OIWQ] human gut metagenome; faeces
17990
18068
+
Leu
TAA
[ENA]
¢þ
>WENV182536956
OIXH01002422
[OIXH] human gut metagenome; faeces
14446
14524
+
Leu
TAA
[ENA]
¢þ
>WENV182611443
OJJX01000084
[OJJX] metagenome; faeces
54
132
+
Leu
TAA
[ENA]
¢þ
>WENV182826594
OKCT01000022
[OKCT] human gut metagenome; human gut
72254
72176
-
Leu
TAA
[ENA]
¢þ
>WENV182827493
OKDA01000001
[OKDA] human gut metagenome; human gut
68167
68089
-
Leu
TAA
[ENA]
¢þ
>WENV182837011
OKGB01000001
[OKGB] human gut metagenome; human gut
44095
44173
+
Leu
TAA
[ENA]
¢þ
>WENV182851096
OKLK01000001
[OKLK] human gut metagenome; human gut
30704
30626
-
Leu
TAA
[ENA]
¢þ
>WENV183770273
PPYE01433188
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
389
311
-
Leu
TAA
[ENA]
¢þ
>WENV183778383
PPYF01120176
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1286
1364
+
Leu
TAA
[ENA]
¢þ
>WENV183784650
PPYF01267234
[PPYF] human gut metagenome; stool from patient with Crohn's disease
17239
17317
+
Leu
TAA
[ENA]
¢þ
>WENV170559991
CYGL01000008
[CYGL] human gut metagenome;
99716
99638
-
Leu
TAA
[ENA]
¢þ
>WENV170560007
CYGL01000008
[CYGL] human gut metagenome;
11261
11183
-
Leu
TAA
[ENA]
¢þ
>PHG0100051
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
28906
28984
+
Leu
TAA
[ENA]
¡û
>PHG181000741
KM092515
Myoviridae
Escherichia phage HY02 (KM092515)
28892
28970
+
Leu
TAA
[ENA]
¡û
>PHG181000785
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
30497
30575
+
Leu
TAA
[ENA]
¡û
>PHG181000837
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
61862
61784
-
Leu
TAA
[ENA]
¡û
>PHG181001027
KP869100
Myoviridae
Escherichia typing phage 1 (KP869100)
11472
11394
-
Leu
TAA
[ENA]
¡û
>PHG181001069
KP869106
Myoviridae
Escherichia coli O157 typing phage 8 (KP869106)
49132
49210
+
Leu
TAA
[ENA]
¡û
>PHG181001091
KP869109
Myoviridae
Escherichia coli O157 typing phage 11 (KP869109)
28312
28390
+
Leu
TAA
[ENA]
¡û
>PHG181001105
KP869110
Myoviridae
Escherichia coli O157 typing phage 12 (KP869110)
85941
85863
-
Leu
TAA
[ENA]
¡û
>PHG181001135
KP869113
Myoviridae
Escherichia coli O157 typing phage 15 (KP869113)
28940
28862
-
Leu
TAA
[ENA]
¡û
>PHG181001169
KR014248
Myoviridae
Escherichia phage vB_EcoM_AYO145A (KR014248)
30054
30132
+
Leu
TAA
[ENA]
¡û
>PHG181001369
KT001916
Myoviridae
Citrobacter phage Michonne (KT001916)
59842
59764
-
Leu
TAA
[ENA]
¡û
>PHG181001688
KT454805
Myoviridae
Escherichia phage SUSP1 (KT454805)
89038
89116
+
Leu
TAA
[ENA]
¡û
>PHG181001708
KT454806
Myoviridae
Escherichia phage SUSP2 (KT454806)
86993
87071
+
Leu
TAA
[ENA]
¡û
>PHG181003218
KX377933
Myoviridae
Escherichia phage vB_EcoM_Alf5 (KX377933)
28186
28264
+
Leu
TAA
[ENA]
¡û
>PHG181003316
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
15213
15291
+
Leu
TAA
[ENA]
¡û
>PHG181005558
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
26964
27042
+
Leu
TAA
[ENA]
¡û
>PHG181006730
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
26222
26300
+
Leu
TAA
[ENA]
¡û
>PHG181006746
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
26255
26333
+
Leu
TAA
[ENA]
¡û
>PHG181006961
MG646669
Myoviridae
Salmonella phage BPS17W1 (MG646669)
73100
73022
-
Leu
TAA
[ENA]
¡û
>PHG181006977
MG646670
Myoviridae
Salmonella phage BPS15S6 (MG646670)
3611
3689
+
Leu
TAA
[ENA]
¡û
>PHG181006999
MG646671
Myoviridae
Salmonella phage BPS17S6 (MG646671)
13703
13781
+
Leu
TAA
[ENA]
¡û
>PHG181007019
MG646672
Myoviridae
Salmonella phage BPS17L1 (MG646672)
70185
70107
-
Leu
TAA
[ENA]
¡û
>PHG181007436
MG969404
Myoviridae
Salmonella phage GE_vB_7A (MG969404)
14559
14637
+
Leu
TAA
[ENA]
¡û
>PHG181007462
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
101051
101129
+
Leu
TAA
[ENA]
¡û
>PHG181007488
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
39515
39437
-
Leu
TAA
[ENA]
¡û
>PHG14100087
EU877232
Myoviridae
Escherichia phage wV8 N4 (EU877232)
30282
30360
+
Leu
TAA
[ENA]
¡û
>PHG14100860
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
28828
28906
+
Leu
TAA
[ENA]
¡û
>PHG14101083
JN225449
Myoviridae
Enterobacteriaphage UAB_Phi87 Sebata (JN225449)
87184
87106
-
Leu
TAA
[ENA]
¡û
>PHG14101099
JN225449
Myoviridae
Enterobacteriaphage UAB_Phi87 Sebata (JN225449)
123
45
-
Leu
TAA
[ENA]
¡û
>PHG14101837
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
12749
12827
+
Leu
TAA
[ENA]
¡û
>PHG14101850
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
50513
50435
-
Leu
TAA
[ENA]
¡û
>PHG14101959
JX560968
Myoviridae
Escherichia phage EC6 JBD67 (JX560968)
15917
15995
+
Leu
TAA
[ENA]
¡û
>PHG14102090
KC139640
Myoviridae
Salmonella phage FSL SP-107 TN106 (KC139640)
21792
21714
-
Leu
TAA
[ENA]
¡û
>PHG14102511
KF055347
Myoviridae
Escherichia phage JH2 phi47:1 (KF055347)
70886
70808
-
Leu
TAA
[ENA]
¡û
>PHG14103324
KM657822
Myoviridae
Escherichia phage vB_EcoM-VpaE1 DSS3-P1 (KM657822)
29047
29125
+
Leu
TAA
[ENA]
¡û
>W1810333673
PURB01000035
Gammaproteobacteria
Escherichia coli KOS_SD04_1507_Eco_073 [PURB]
17130
17052
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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