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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = TAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.666847 (30 seq.)
>WENV001115
AACY020034140
Marine microbial communities from Global Ocean Sampling (GOS)
311
237
-
Val
TAC
[ENA]
>WENV180114304
OAPS01003675
[OAPS] marine metagenome; sea water
817
746
-
Val
TAC
[ENA]
¢þ
>WENV180380350
OBOQ01033899
[OBOQ] marine metagenome; Fridge
221
148
-
Val
TAC
[ENA]
¢þ
>WENV180594794
OCPA01010552
[OCPA] marine metagenome; ENVO:00002010
244
171
-
Val
TAC
[ENA]
¢þ
>WENV183055508
OLHD01000151
[OLHD] seawater metagenome; Sea water
3781
3852
+
Val
TAC
[ENA]
¢þ
>WENV183056723
OLHJ01007064
[OLHJ] seawater metagenome; Sea water
1471
1542
+
Val
TAC
[ENA]
¢þ
>WENV183059876
OLHW01000252
[OLHW] seawater metagenome; Sea water
2249
2320
+
Val
TAC
[ENA]
¢þ
>WENV183065094
OLII01021063
[OLII] seawater metagenome; Sea water
925
996
+
Val
TAC
[ENA]
¢þ
>WENV170271408
CERJ01012329
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
303
374
+
Val
TAC
[ENA]
¢þ
>WENV170276902
CERO01061403
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13
84
+
Val
TAC
[ENA]
¢þ
>WENV170385417
CETY01066755
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
663
734
+
Val
TAC
[ENA]
¢þ
>WENV170470686
CEVG01003942
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
546
475
-
Val
TAC
[ENA]
¢þ
>WENV170616882
FUWD012906724
[FUWD] metagenome; unknown
640
711
+
Val
TAC
[ENA]
¢þ
>WENV170617998
FUWD012946656
[FUWD] metagenome; unknown
236
163
-
Val
TAC
[ENA]
¢þ
>WENV170618255
FUWD012959959
[FUWD] metagenome; unknown
22
95
+
Val
TAC
[ENA]
¢þ
>WENV170618405
FUWD012966838
[FUWD] metagenome; unknown
704
775
+
Val
TAC
[ENA]
¢þ
>WENV170618407
FUWD012966839
[FUWD] metagenome; unknown
135
206
+
Val
TAC
[ENA]
¢þ
>WENV170809234
MDSW01128386
[MDSW] marine metagenome; seawater
768
839
+
Val
TAC
[ENA]
¢þ
>WENV170923726
MDTG01053808
[MDTG] marine metagenome; seawater
4429
4358
-
Val
TAC
[ENA]
¢þ
>PHG181002121
KU594607
Myoviridae
Cyanophage S-RIM44 (KU594607)
165378
165449
+
Val
TAC
[ENA]
¡û
>PHG181003028
KX349291
Myoviridae
Cyanophage S-RIM44 (KX349291)
170178
170249
+
Val
TAC
[ENA]
¡û
>PHG181003034
KX349292
Myoviridae
Cyanophage S-RIM44 (KX349292)
165380
165451
+
Val
TAC
[ENA]
¡û
>PHG181003039
KX349293
Myoviridae
Cyanophage S-RIM44 (KX349293)
170417
170488
+
Val
TAC
[ENA]
¡û
>PHG181003044
KX349294
Myoviridae
Cyanophage S-RIM44 (KX349294)
170133
170204
+
Val
TAC
[ENA]
¡û
>PHG181003050
KX349295
Myoviridae
Cyanophage S-RIM44 (KX349295)
165351
165422
+
Val
TAC
[ENA]
¡û
>PHG181003055
KX349296
Myoviridae
Cyanophage S-RIM44 (KX349296)
170178
170249
+
Val
TAC
[ENA]
¡û
>PHG181003061
KX349297
Myoviridae
Cyanophage S-RIM44 (KX349297)
165657
165728
+
Val
TAC
[ENA]
¡û
>PHG14100310
GU071105
unclassified bacterial viruses
Prochlorococcus phage Syn1 (GU071105)
163574
163645
+
Val
TAC
[ENA]
¡û
>WENV074421
AACY023974549
Marine microbial communities from Global Ocean Sampling (GOS)
356
430
+
Val
TAC
[ENA]
>WENV000867
AACY020027476
Marine microbial communities from Global Ocean Sampling (GOS)
465
539
+
Val
TAC
[ENA]
Identical group No.667796 (44 seq.)
>WENV181193328
OEQM01000020
[OEQM] metagenome; water of meat washing
68491
68417
-
Val
TAC
[ENA]
¢þ
>WENV181198152
OERD01000215
[OERD] metagenome; water of meat washing
17898
17972
+
Val
TAC
[ENA]
¢þ
>WENV181199431
OERH01000408
[OERH] metagenome; water of meat washing
2500
2574
+
Val
TAC
[ENA]
¢þ
>WENV182536953
OIXH01002422
[OIXH] human gut metagenome; faeces
13629
13703
+
Val
TAC
[ENA]
¢þ
>WENV182611458
OJJX01000084
[OJJX] metagenome; faeces
87080
87154
+
Val
TAC
[ENA]
¢þ
>WENV182826590
OKCT01000022
[OKCT] human gut metagenome; human gut
73390
73316
-
Val
TAC
[ENA]
¢þ
>WENV182827489
OKDA01000001
[OKDA] human gut metagenome; human gut
69303
69229
-
Val
TAC
[ENA]
¢þ
>WENV182837007
OKGB01000001
[OKGB] human gut metagenome; human gut
42959
43033
+
Val
TAC
[ENA]
¢þ
>WENV182851092
OKLK01000001
[OKLK] human gut metagenome; human gut
31840
31766
-
Val
TAC
[ENA]
¢þ
>WENV183770269
PPYE01433188
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1287
1213
-
Val
TAC
[ENA]
¢þ
>WENV183778379
PPYF01120176
[PPYF] human gut metagenome; stool from patient with Crohn's disease
151
225
+
Val
TAC
[ENA]
¢þ
>WENV183784647
PPYF01267234
[PPYF] human gut metagenome; stool from patient with Crohn's disease
16422
16496
+
Val
TAC
[ENA]
¢þ
>WENV183791956
PPYF01442932
[PPYF] human gut metagenome; stool from patient with Crohn's disease
496
422
-
Val
TAC
[ENA]
¢þ
>WENV170560003
CYGL01000008
[CYGL] human gut metagenome;
12507
12433
-
Val
TAC
[ENA]
¢þ
>PHG0100047
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
27900
27974
+
Val
TAC
[ENA]
¡û
>PHG181000737
KM092515
Myoviridae
Escherichia phage HY02 (KM092515)
27994
28068
+
Val
TAC
[ENA]
¡û
>PHG181000781
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
29490
29564
+
Val
TAC
[ENA]
¡û
>PHG181000834
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
62678
62604
-
Val
TAC
[ENA]
¡û
>PHG181001023
KP869100
Myoviridae
Escherichia typing phage 1 (KP869100)
12607
12533
-
Val
TAC
[ENA]
¡û
>PHG181001065
KP869106
Myoviridae
Escherichia coli O157 typing phage 8 (KP869106)
47997
48071
+
Val
TAC
[ENA]
¡û
>PHG181001087
KP869109
Myoviridae
Escherichia coli O157 typing phage 11 (KP869109)
27177
27251
+
Val
TAC
[ENA]
¡û
>PHG181001101
KP869110
Myoviridae
Escherichia coli O157 typing phage 12 (KP869110)
87076
87002
-
Val
TAC
[ENA]
¡û
>PHG181001140
KP869113
Myoviridae
Escherichia coli O157 typing phage 15 (KP869113)
790
716
-
Val
TAC
[ENA]
¡û
>PHG181003215
KX377933
Myoviridae
Escherichia phage vB_EcoM_Alf5 (KX377933)
27370
27444
+
Val
TAC
[ENA]
¡û
>PHG181004220
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
5048
5122
+
Val
TAC
[ENA]
¡û
>PHG181005555
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
26048
26122
+
Val
TAC
[ENA]
¡û
>PHG181006727
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
25406
25480
+
Val
TAC
[ENA]
¡û
>PHG181006743
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
25439
25513
+
Val
TAC
[ENA]
¡û
>PHG181007432
MG969404
Myoviridae
Salmonella phage GE_vB_7A (MG969404)
13661
13735
+
Val
TAC
[ENA]
¡û
>PHG181007447
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
13525
13599
+
Val
TAC
[ENA]
¡û
>PHG181007459
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
100237
100311
+
Val
TAC
[ENA]
¡û
>PHG181007474
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
78844
78770
-
Val
TAC
[ENA]
¡û
>PHG181007485
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
40328
40254
-
Val
TAC
[ENA]
¡û
>PHG14100083
EU877232
Myoviridae
Escherichia phage wV8 N4 (EU877232)
29147
29221
+
Val
TAC
[ENA]
¡û
>PHG14100328
GU169904
Myoviridae
Staphylococcus phage SA1 B11 (GU169904)
60780
60854
+
Val
TAC
[ENA]
¡û
>PHG14100856
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
27822
27896
+
Val
TAC
[ENA]
¡û
>PHG14101095
JN225449
Myoviridae
Enterobacteriaphage UAB_Phi87 Sebata (JN225449)
1259
1185
-
Val
TAC
[ENA]
¡û
>PHG14101834
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
11933
12007
+
Val
TAC
[ENA]
¡û
>PHG14101847
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
51329
51255
-
Val
TAC
[ENA]
¡û
>PHG14102049
KC139527
Myoviridae
Salmonella phage FSL SP-010 TN106 (KC139527)
22929
22855
-
Val
TAC
[ENA]
¡û
>PHG14102068
KC139543
Myoviridae
Salmonella phage FSL SP-012 TN106 (KC139543)
22931
22857
-
Val
TAC
[ENA]
¡û
>PHG14102087
KC139640
Myoviridae
Salmonella phage FSL SP-107 TN106 (KC139640)
22609
22535
-
Val
TAC
[ENA]
¡û
>PHG14102507
KF055347
Myoviridae
Escherichia phage JH2 phi47:1 (KF055347)
71784
71710
-
Val
TAC
[ENA]
¡û
>PHG14103321
KM657822
Myoviridae
Escherichia phage vB_EcoM-VpaE1 DSS3-P1 (KM657822)
28230
28304
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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