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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = TCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480709 (5 seq.)
>PHG181002122
KU594607
Myoviridae
Cyanophage S-RIM44 (KU594607)
169615
169687
+
Gly
TCC
[ENA]
¡û
>PHG181003035
KX349292
Myoviridae
Cyanophage S-RIM44 (KX349292)
169617
169689
+
Gly
TCC
[ENA]
¡û
>PHG181003051
KX349295
Myoviridae
Cyanophage S-RIM44 (KX349295)
169588
169660
+
Gly
TCC
[ENA]
¡û
>PHG181003062
KX349297
Myoviridae
Cyanophage S-RIM44 (KX349297)
169894
169966
+
Gly
TCC
[ENA]
¡û
>PHG14100311
GU071105
unclassified bacterial viruses
Prochlorococcus phage Syn1 (GU071105)
167811
167883
+
Gly
TCC
[ENA]
¡û
Identical group No.653485 (58 seq.)
>W1710930610
LOGX01000079
Gammaproteobacteria
Escherichia coli [LOGX]
2491
2417
-
Gly
TCC
[ENA]
¡û
>W131048123
AMUG01000363
Gammaproteobacteria
Escherichia coli 5905 [AMUG]
1614
1540
-
Gly
TCC
[ENA]
¡û
>W1711235819
LYDJ01000621
Gammaproteobacteria
Escherichia coli [LYDJ]
13482
13556
+
Gly
TCC
[ENA]
¡û
>W1711452846
MIXF01000177
Gammaproteobacteria
Escherichia coli [MIXF]
124
50
-
Gly
TCC
[ENA]
¡û
>W1711696307
MSJS02000043
Gammaproteobacteria
Shigella boydii [MSJS]
125
51
-
Gly
TCC
[ENA]
¡û
>W1711777418
MVLB01000122
Gammaproteobacteria
Escherichia coli [MVLB]
2162
2088
-
Gly
TCC
[ENA]
¡û
>W1711777595
MVLD01000097
Gammaproteobacteria
Escherichia coli [MVLD]
1856
1930
+
Gly
TCC
[ENA]
¡û
>W1711777677
MVLE01000070
Gammaproteobacteria
Escherichia coli [MVLE]
4889
4963
+
Gly
TCC
[ENA]
¡û
>W1711777866
MVLG01000064
Gammaproteobacteria
Escherichia coli [MVLG]
1856
1930
+
Gly
TCC
[ENA]
¡û
>W1711777951
MVLH01000090
Gammaproteobacteria
Escherichia coli [MVLH]
1348
1274
-
Gly
TCC
[ENA]
¡û
>W1711778030
MVLI01000051
Gammaproteobacteria
Escherichia coli [MVLI]
1348
1274
-
Gly
TCC
[ENA]
¡û
>W1711778127
MVLJ01000113
Gammaproteobacteria
Escherichia coli [MVLJ]
1286
1212
-
Gly
TCC
[ENA]
¡û
>W1711778214
MVLK01000079
Gammaproteobacteria
Escherichia coli [MVLK]
3399
3325
-
Gly
TCC
[ENA]
¡û
>W1711778302
MVLL01000075
Gammaproteobacteria
Escherichia coli [MVLL]
3046
3120
+
Gly
TCC
[ENA]
¡û
>W141013312
AIAD01000291
Gammaproteobacteria
Escherichia coli C1244_91 [AIAD]
216
142
-
Gly
TCC
[ENA]
¡û
>W141013617
AIAH01000380
Gammaproteobacteria
Escherichia coli C157_11 [AIAH]
410
336
-
Gly
TCC
[ENA]
¡û
>W141017272
AICD01000047
Gammaproteobacteria
Escherichia coli C93_11 [AICD]
927
853
-
Gly
TCC
[ENA]
¡û
>WENV180400280
OBRH01001741
[OBRH] human gut metagenome; ENVO:feces
475
401
-
Gly
TCC
[ENA]
¢þ
>W141049922
AMUP01000136
Gammaproteobacteria
Escherichia coli 7798 [AMUP]
1281
1207
-
Gly
TCC
[ENA]
¡û
>W1910077394
BFKS01000034
Gammaproteobacteria
Escherichia coli HH-P022 [BFKS]
4417
4491
+
Gly
TCC
[ENA]
¡û
>W1910107656
BGAO01000219
Gammaproteobacteria
Escherichia coli KS-P035 [BGAO]
3016
3090
+
Gly
TCC
[ENA]
¡û
>W1910108467
BGAY01000212
Gammaproteobacteria
Escherichia coli KS-P052 [BGAY]
3018
3092
+
Gly
TCC
[ENA]
¡û
>W1910108706
BGBB01000223
Gammaproteobacteria
Escherichia coli KS-P056 [BGBB]
3016
3090
+
Gly
TCC
[ENA]
¡û
>W1910109524
BGBL01000113
Gammaproteobacteria
Escherichia coli KS-P071 [BGBL]
5102
5176
+
Gly
TCC
[ENA]
¡û
>W1910122743
BGIB01000098
Gammaproteobacteria
Escherichia coli SI-P002 [BGIB]
991
917
-
Gly
TCC
[ENA]
¡û
>W1910132337
BIAR01000041
Gammaproteobacteria
Escherichia coli 39-1BK [BIAR]
1807
1881
+
Gly
TCC
[ENA]
¡û
>PHG14101496
JQ347801
unclassified bacterial viruses
Escherichia phage JLK-2012 DEC5E (JQ347801)
23561
23635
+
Gly
TCC
[ENA]
¡û
>W1910970212
NJZN01000063
Gammaproteobacteria
Escherichia coli MOD1-EC1566 [NJZN]
949
875
-
Gly
TCC
[ENA]
¡û
>W1911057251
NMIG01000203
Gammaproteobacteria
Escherichia coli MOD1-EC6382 [NMIG]
194
120
-
Gly
TCC
[ENA]
¡û
>W1911132095
NOSR01000119
Gammaproteobacteria
Escherichia coli MOD1-EC6757 [NOSR]
498
424
-
Gly
TCC
[ENA]
¡û
>W1810748102
QOXW01000119
Gammaproteobacteria
Escherichia coli MOD1-ECOR37 [QOXW]
1720
1646
-
Gly
TCC
[ENA]
¡û
>W1510027862
CCBY01000287
Gammaproteobacteria
Escherichia coli [CCBY]
1057
983
-
Gly
TCC
[ENA]
¡û
>W1510028293
CCCD01000280
Gammaproteobacteria
Escherichia coli [CCCD]
2950
3024
+
Gly
TCC
[ENA]
¡û
>W1510028332
CCCD01002253
Gammaproteobacteria
Escherichia coli [CCCD]
214
140
-
Gly
TCC
[ENA]
¡û
>W1510028473
CCCF01000213
Gammaproteobacteria
Escherichia coli [CCCF]
2935
3009
+
Gly
TCC
[ENA]
¡û
>W1510029055
CCCK01000239
Gammaproteobacteria
Escherichia coli [CCCK]
548
474
-
Gly
TCC
[ENA]
¡û
>W1510029097
CCCK01002052
Gammaproteobacteria
Escherichia coli [CCCK]
321
247
-
Gly
TCC
[ENA]
¡û
>W1510078581
CDQU01000193
Gammaproteobacteria
Escherichia coli B7C5 [CDQU]
367
293
-
Gly
TCC
[ENA]
¡û
>W1510078782
CDQW01000231
Gammaproteobacteria
Escherichia coli E8C1 [CDQW]
2942
3016
+
Gly
TCC
[ENA]
¡û
>W1510078986
CDQY01000266
Gammaproteobacteria
Escherichia coli 2d8A [CDQY]
2967
3041
+
Gly
TCC
[ENA]
¡û
>W1510079165
CDRA01000216
Gammaproteobacteria
Escherichia coli 4e8A [CDRA]
4446
4372
-
Gly
TCC
[ENA]
¡û
>W1510080310
CDRO01000289
Gammaproteobacteria
Escherichia coli 57A_A7 [CDRO]
2950
3024
+
Gly
TCC
[ENA]
¡û
>W1510080356
CDRO01002271
Gammaproteobacteria
Escherichia coli 57A_A7 [CDRO]
214
140
-
Gly
TCC
[ENA]
¡û
>W1510080552
CDRQ01000198
Gammaproteobacteria
Escherichia coli 57A_A8 [CDRQ]
6432
6506
+
Gly
TCC
[ENA]
¡û
>W1510727754
CYAE01000050
Gammaproteobacteria
Escherichia coli 100554_aEPEC [CYAE]
2471
2397
-
Gly
TCC
[ENA]
¡û
>W1510728009
CYAH01000045
Gammaproteobacteria
Escherichia coli 500618_aEPEC [CYAH]
2471
2397
-
Gly
TCC
[ENA]
¡û
>W1510729220
CYAV01000106
Gammaproteobacteria
Escherichia coli 503225_aEPEC [CYAV]
771
697
-
Gly
TCC
[ENA]
¡û
>W1510729484
CYAY01000082
Gammaproteobacteria
Escherichia coli 300086_aEPEC [CYAY]
6259
6333
+
Gly
TCC
[ENA]
¡û
>W1510730430
CYBJ01000050
Gammaproteobacteria
Escherichia coli 200758_aEPEC [CYBJ]
13410
13484
+
Gly
TCC
[ENA]
¡û
>W1510732434
CYCH01000056
Gammaproteobacteria
Escherichia coli 702745_aEPEC [CYCH]
15048
15122
+
Gly
TCC
[ENA]
¡û
>W1510733175
CYCQ01000083
Gammaproteobacteria
Escherichia coli 702890_aEPEC [CYCQ]
4578
4652
+
Gly
TCC
[ENA]
¡û
>W1510734374
CYDE01000060
Gammaproteobacteria
Escherichia coli 500989 [CYDE]
13769
13843
+
Gly
TCC
[ENA]
¡û
>W1510736363
CYEO01000109
Gammaproteobacteria
Escherichia coli 703753 [CYEO]
2276
2350
+
Gly
TCC
[ENA]
¡û
>W1510738300
CYFN01000078
Gammaproteobacteria
Escherichia coli 700149 [CYFN]
14028
14102
+
Gly
TCC
[ENA]
¡û
>W1510738793
CYFT01000129
Gammaproteobacteria
Escherichia coli 402617 [CYFT]
1681
1607
-
Gly
TCC
[ENA]
¡û
>W1510740583
CYGQ01000046
Gammaproteobacteria
Escherichia coli 100446 [CYGQ]
15027
15101
+
Gly
TCC
[ENA]
¡û
>W1511630044
LDCR01000090
Gammaproteobacteria
Escherichia coli CFSAN026818 [LDCR]
4139
4213
+
Gly
TCC
[ENA]
¡û
>W1610788152
LOGX01000079
Gammaproteobacteria
Escherichia coli [LOGX]
2491
2417
-
Gly
TCC
[ENA]
¡û
Identical group No.662534 (66 seq.)
>WENV180369211
OBOG01047853
[OBOG] marine metagenome; seawater
426
500
+
Gly
TCC
[ENA]
¢þ
>WENV180472284
OBYQ01000180
[OBYQ] human gut metagenome; faeces
17090
17164
+
Gly
TCC
[ENA]
¢þ
>WENV181193326
OEQM01000020
[OEQM] metagenome; water of meat washing
68744
68670
-
Gly
TCC
[ENA]
¢þ
>WENV181195574
OEQT01004684
[OEQT] metagenome; water of meat washing
95
169
+
Gly
TCC
[ENA]
¢þ
>WENV181198150
OERD01000215
[OERD] metagenome; water of meat washing
17645
17719
+
Gly
TCC
[ENA]
¢þ
>WENV181199429
OERH01000408
[OERH] metagenome; water of meat washing
2247
2321
+
Gly
TCC
[ENA]
¢þ
>WENV181200211
OERJ01006531
[OERJ] metagenome; water of meat washing
187
261
+
Gly
TCC
[ENA]
¢þ
>WENV182520496
OIWQ01001088
[OIWQ] human gut metagenome; faeces
16734
16808
+
Gly
TCC
[ENA]
¢þ
>WENV182536951
OIXH01002422
[OIXH] human gut metagenome; faeces
13376
13450
+
Gly
TCC
[ENA]
¢þ
>WENV182611456
OJJX01000084
[OJJX] metagenome; faeces
86827
86901
+
Gly
TCC
[ENA]
¢þ
>WENV182826588
OKCT01000022
[OKCT] human gut metagenome; human gut
73644
73570
-
Gly
TCC
[ENA]
¢þ
>WENV182827487
OKDA01000001
[OKDA] human gut metagenome; human gut
69557
69483
-
Gly
TCC
[ENA]
¢þ
>WENV182837005
OKGB01000001
[OKGB] human gut metagenome; human gut
42705
42779
+
Gly
TCC
[ENA]
¢þ
>WENV182851090
OKLK01000001
[OKLK] human gut metagenome; human gut
32094
32020
-
Gly
TCC
[ENA]
¢þ
>WENV183770267
PPYE01433188
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1540
1466
-
Gly
TCC
[ENA]
¢þ
>WENV183784645
PPYF01267234
[PPYF] human gut metagenome; stool from patient with Crohn's disease
16168
16242
+
Gly
TCC
[ENA]
¢þ
>WENV183791954
PPYF01442932
[PPYF] human gut metagenome; stool from patient with Crohn's disease
750
676
-
Gly
TCC
[ENA]
¢þ
>WENV170559985
CYGL01000008
[CYGL] human gut metagenome;
101217
101143
-
Gly
TCC
[ENA]
¢þ
>WENV170560001
CYGL01000008
[CYGL] human gut metagenome;
12761
12687
-
Gly
TCC
[ENA]
¢þ
>WENV170560505
CYGL01003348
[CYGL] human gut metagenome;
630
556
-
Gly
TCC
[ENA]
¢þ
>WENV170560608
CYGL01010855
[CYGL] human gut metagenome;
398
324
-
Gly
TCC
[ENA]
¢þ
>PHG0100045
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
27224
27298
+
Gly
TCC
[ENA]
¡û
>PHG181000735
KM092515
Myoviridae
Escherichia phage HY02 (KM092515)
27739
27813
+
Gly
TCC
[ENA]
¡û
>PHG181000779
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
29236
29310
+
Gly
TCC
[ENA]
¡û
>PHG181000832
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
62931
62857
-
Gly
TCC
[ENA]
¡û
>PHG181001021
KP869100
Myoviridae
Escherichia typing phage 1 (KP869100)
12861
12787
-
Gly
TCC
[ENA]
¡û
>PHG181001063
KP869106
Myoviridae
Escherichia coli O157 typing phage 8 (KP869106)
47743
47817
+
Gly
TCC
[ENA]
¡û
>PHG181001085
KP869109
Myoviridae
Escherichia coli O157 typing phage 11 (KP869109)
26923
26997
+
Gly
TCC
[ENA]
¡û
>PHG181001099
KP869110
Myoviridae
Escherichia coli O157 typing phage 12 (KP869110)
87330
87256
-
Gly
TCC
[ENA]
¡û
>PHG181001131
KP869113
Myoviridae
Escherichia coli O157 typing phage 15 (KP869113)
30406
30332
-
Gly
TCC
[ENA]
¡û
>PHG181001163
KR014248
Myoviridae
Escherichia phage vB_EcoM_AYO145A (KR014248)
28902
28976
+
Gly
TCC
[ENA]
¡û
>PHG181001682
KT454805
Myoviridae
Escherichia phage SUSP1 (KT454805)
87711
87785
+
Gly
TCC
[ENA]
¡û
>PHG181001702
KT454806
Myoviridae
Escherichia phage SUSP2 (KT454806)
85663
85737
+
Gly
TCC
[ENA]
¡û
>PHG181003213
KX377933
Myoviridae
Escherichia phage vB_EcoM_Alf5 (KX377933)
27117
27191
+
Gly
TCC
[ENA]
¡û
>PHG181003311
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
13639
13713
+
Gly
TCC
[ENA]
¡û
>PHG181004218
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
4795
4869
+
Gly
TCC
[ENA]
¡û
>PHG181004300
KY654690
Myoviridae
Citrobacter phage Mijalis (KY654690)
62348
62274
-
Gly
TCC
[ENA]
¡û
>PHG181005055
MF158043
Myoviridae
Shigella phage Sf16 (MF158043)
19091
19165
+
Gly
TCC
[ENA]
¡û
>PHG181005227
MF327003
Myoviridae
Shigella phage Sf14 (MF327003)
16740
16814
+
Gly
TCC
[ENA]
¡û
>PHG181005553
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
25593
25667
+
Gly
TCC
[ENA]
¡û
>PHG181006562
MG065664
Myoviridae
Campylobacter phage A132 (MG065664)
2108
2182
+
Gly
TCC
[ENA]
¡û
>PHG181006725
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
25153
25227
+
Gly
TCC
[ENA]
¡û
>PHG181006741
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
25186
25260
+
Gly
TCC
[ENA]
¡û
>PHG181006956
MG646669
Myoviridae
Salmonella phage BPS17W1 (MG646669)
74170
74096
-
Gly
TCC
[ENA]
¡û
>PHG181006972
MG646670
Myoviridae
Salmonella phage BPS15S6 (MG646670)
2541
2615
+
Gly
TCC
[ENA]
¡û
>PHG181006994
MG646671
Myoviridae
Salmonella phage BPS17S6 (MG646671)
12633
12707
+
Gly
TCC
[ENA]
¡û
>PHG181007013
MG646672
Myoviridae
Salmonella phage BPS17L1 (MG646672)
71336
71262
-
Gly
TCC
[ENA]
¡û
>PHG181007430
MG969404
Myoviridae
Salmonella phage GE_vB_7A (MG969404)
13406
13480
+
Gly
TCC
[ENA]
¡û
>PHG181007445
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
13272
13346
+
Gly
TCC
[ENA]
¡û
>PHG181007472
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
79097
79023
-
Gly
TCC
[ENA]
¡û
>PHG181007483
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
40581
40507
-
Gly
TCC
[ENA]
¡û
>PHG181007706
MH051914
Myoviridae
Enterobacteria phage vB_EcoM_IME338 (MH051914)
29066
29140
+
Gly
TCC
[ENA]
¡û
>PHG14100081
EU877232
Myoviridae
Escherichia phage wV8 N4 (EU877232)
28893
28967
+
Gly
TCC
[ENA]
¡û
>PHG14100326
GU169904
Myoviridae
Staphylococcus phage SA1 B11 (GU169904)
60527
60601
+
Gly
TCC
[ENA]
¡û
>PHG14100854
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
27146
27220
+
Gly
TCC
[ENA]
¡û
>PHG14101093
JN225449
Myoviridae
Enterobacteriaphage UAB_Phi87 Sebata (JN225449)
1512
1438
-
Gly
TCC
[ENA]
¡û
>PHG14101832
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
11680
11754
+
Gly
TCC
[ENA]
¡û
>PHG14101845
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
51582
51508
-
Gly
TCC
[ENA]
¡û
>PHG14101953
JX560968
Myoviridae
Escherichia phage EC6 JBD67 (JX560968)
14418
14492
+
Gly
TCC
[ENA]
¡û
>PHG14102047
KC139527
Myoviridae
Salmonella phage FSL SP-010 TN106 (KC139527)
23183
23109
-
Gly
TCC
[ENA]
¡û
>PHG14102066
KC139543
Myoviridae
Salmonella phage FSL SP-012 TN106 (KC139543)
23185
23111
-
Gly
TCC
[ENA]
¡û
>PHG14102085
KC139640
Myoviridae
Salmonella phage FSL SP-107 TN106 (KC139640)
22862
22788
-
Gly
TCC
[ENA]
¡û
>PHG14102505
KF055347
Myoviridae
Escherichia phage JH2 phi47:1 (KF055347)
72037
71963
-
Gly
TCC
[ENA]
¡û
>PHG14103079
KM236239
Myoviridae
Citrobacter phage Moogle LIKBL0011 (KM236239)
62348
62274
-
Gly
TCC
[ENA]
¡û
>PHG14103319
KM657822
Myoviridae
Escherichia phage vB_EcoM-VpaE1 DSS3-P1 (KM657822)
27977
28051
+
Gly
TCC
[ENA]
¡û
>W1810333670
PURB01000035
Gammaproteobacteria
Escherichia coli KOS_SD04_1507_Eco_073 [PURB]
17460
17386
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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