This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.523523 (9 seq.)
>WENV180369210
OBOG01047853
[OBOG] marine metagenome; seawater
344
419
+
Ala
TGC
[ENA]
¢þ
>PHG0100044
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
27142
27217
+
Ala
TGC
[ENA]
¡û
>PHG181000831
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
63013
62938
-
Ala
TGC
[ENA]
¡û
>PHG181005552
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
25511
25586
+
Ala
TGC
[ENA]
¡û
>PHG181006724
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
25071
25146
+
Ala
TGC
[ENA]
¡û
>PHG181006740
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
25104
25179
+
Ala
TGC
[ENA]
¡û
>PHG14100853
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
27064
27139
+
Ala
TGC
[ENA]
¡û
>PHG14101831
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
11598
11673
+
Ala
TGC
[ENA]
¡û
>PHG14101844
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
51664
51589
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK