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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285156 (52 seq.)
>WENV180375692
OBOL01047875
[OBOL] marine metagenome; Surface water
288
364
+
Pro
TGG
[ENA]
¢þ
>WENV180472276
OBYQ01000180
[OBYQ] human gut metagenome; faeces
14595
14671
+
Pro
TGG
[ENA]
¢þ
>WENV180492957
OBZY01000040
[OBZY] human gut metagenome; faeces
2388
2464
+
Pro
TGG
[ENA]
¢þ
>WENV181193317
OEQM01000020
[OEQM] metagenome; water of meat washing
71299
71223
-
Pro
TGG
[ENA]
¢þ
>WENV181198141
OERD01000215
[OERD] metagenome; water of meat washing
15090
15166
+
Pro
TGG
[ENA]
¢þ
>WENV181199404
OERH01000180
[OERH] metagenome; water of meat washing
12055
12131
+
Pro
TGG
[ENA]
¢þ
>WENV181200202
OERJ01005629
[OERJ] metagenome; water of meat washing
282
358
+
Pro
TGG
[ENA]
¢þ
>WENV181201487
OERO01001038
[OERO] metagenome; water of meat washing
1984
1908
-
Pro
TGG
[ENA]
¢þ
>WENV182611448
OJJX01000084
[OJJX] metagenome; faeces
84273
84349
+
Pro
TGG
[ENA]
¢þ
>WENV182826579
OKCT01000022
[OKCT] human gut metagenome; human gut
76233
76157
-
Pro
TGG
[ENA]
¢þ
>WENV182827478
OKDA01000001
[OKDA] human gut metagenome; human gut
72146
72070
-
Pro
TGG
[ENA]
¢þ
>WENV182836996
OKGB01000001
[OKGB] human gut metagenome; human gut
40116
40192
+
Pro
TGG
[ENA]
¢þ
>WENV182851081
OKLK01000001
[OKLK] human gut metagenome; human gut
34683
34607
-
Pro
TGG
[ENA]
¢þ
>WENV183770257
PPYE01433188
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
5050
4974
-
Pro
TGG
[ENA]
¢þ
>WENV183784639
PPYF01267234
[PPYF] human gut metagenome; stool from patient with Crohn's disease
14275
14351
+
Pro
TGG
[ENA]
¢þ
>WENV183791946
PPYF01442932
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3265
3189
-
Pro
TGG
[ENA]
¢þ
>WENV170559996
CYGL01000008
[CYGL] human gut metagenome;
15437
15361
-
Pro
TGG
[ENA]
¢þ
>PHG0100040
AF320576
Myoviridae
Salmonella phage FelixO1 URLIE 9 (AF320576)
23699
23775
+
Pro
TGG
[ENA]
¡û
>PHG181000727
KM092515
Myoviridae
Escherichia phage HY02 (KM092515)
25341
25417
+
Pro
TGG
[ENA]
¡û
>PHG181000769
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
26880
26956
+
Pro
TGG
[ENA]
¡û
>PHG181000824
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
65574
65498
-
Pro
TGG
[ENA]
¡û
>PHG181001011
KP869100
Myoviridae
Escherichia typing phage 1 (KP869100)
15340
15264
-
Pro
TGG
[ENA]
¡û
>PHG181001054
KP869106
Myoviridae
Escherichia coli O157 typing phage 8 (KP869106)
44836
44912
+
Pro
TGG
[ENA]
¡û
>PHG181001076
KP869109
Myoviridae
Escherichia coli O157 typing phage 11 (KP869109)
24016
24092
+
Pro
TGG
[ENA]
¡û
>PHG181001110
KP869110
Myoviridae
Escherichia coli O157 typing phage 12 (KP869110)
1751
1675
-
Pro
TGG
[ENA]
¡û
>PHG181001154
KR014248
Myoviridae
Escherichia phage vB_EcoM_AYO145A (KR014248)
26382
26458
+
Pro
TGG
[ENA]
¡û
>PHG181003205
KX377933
Myoviridae
Escherichia phage vB_EcoM_Alf5 (KX377933)
24208
24284
+
Pro
TGG
[ENA]
¡û
>PHG181003302
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
10996
11072
+
Pro
TGG
[ENA]
¡û
>PHG181004210
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
2154
2230
+
Pro
TGG
[ENA]
¡û
>PHG181005544
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
22896
22972
+
Pro
TGG
[ENA]
¡û
>PHG181006718
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
23052
23128
+
Pro
TGG
[ENA]
¡û
>PHG181006734
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
23085
23161
+
Pro
TGG
[ENA]
¡û
>PHG181006947
MG646669
Myoviridae
Salmonella phage BPS17W1 (MG646669)
77192
77116
-
Pro
TGG
[ENA]
¡û
>PHG181006982
MG646670
Myoviridae
Salmonella phage BPS15S6 (MG646670)
87128
87204
+
Pro
TGG
[ENA]
¡û
>PHG181006985
MG646671
Myoviridae
Salmonella phage BPS17S6 (MG646671)
9611
9687
+
Pro
TGG
[ENA]
¡û
>PHG181007004
MG646672
Myoviridae
Salmonella phage BPS17L1 (MG646672)
74351
74275
-
Pro
TGG
[ENA]
¡û
>PHG181007422
MG969404
Myoviridae
Salmonella phage GE_vB_7A (MG969404)
10504
10580
+
Pro
TGG
[ENA]
¡û
>PHG181007451
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
97350
97426
+
Pro
TGG
[ENA]
¡û
>PHG181007466
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
81730
81654
-
Pro
TGG
[ENA]
¡û
>PHG181007697
MH051914
Myoviridae
Enterobacteria phage vB_EcoM_IME338 (MH051914)
26667
26743
+
Pro
TGG
[ENA]
¡û
>PHG14100075
EU877232
Myoviridae
Escherichia phage wV8 N4 (EU877232)
25986
26062
+
Pro
TGG
[ENA]
¡û
>PHG14100336
GU169904
Myoviridae
Staphylococcus phage SA1 B11 (GU169904)
146853
146929
+
Pro
TGG
[ENA]
¡û
>PHG14100849
JF461087
Myoviridae
Salmonella phage FO1a PAS-1 (JF461087)
23621
23697
+
Pro
TGG
[ENA]
¡û
>PHG14101087
JN225449
Myoviridae
Enterobacteriaphage UAB_Phi87 Sebata (JN225449)
4114
4038
-
Pro
TGG
[ENA]
¡û
>PHG14101828
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
9578
9654
+
Pro
TGG
[ENA]
¡û
>PHG14101841
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
53684
53608
-
Pro
TGG
[ENA]
¡û
>PHG14102057
KC139528
Myoviridae
Salmonella phage FSL SP-010 TN106 (KC139528)
11585
11661
+
Pro
TGG
[ENA]
¡û
>PHG14102061
KC139543
Myoviridae
Salmonella phage FSL SP-012 TN106 (KC139543)
25674
25598
-
Pro
TGG
[ENA]
¡û
>PHG14102080
KC139640
Myoviridae
Salmonella phage FSL SP-107 TN106 (KC139640)
25829
25753
-
Pro
TGG
[ENA]
¡û
>PHG14102499
KF055347
Myoviridae
Escherichia phage JH2 phi47:1 (KF055347)
74699
74623
-
Pro
TGG
[ENA]
¡û
>PHG14103312
KM657822
Myoviridae
Escherichia phage vB_EcoM-VpaE1 DSS3-P1 (KM657822)
25483
25559
+
Pro
TGG
[ENA]
¡û
>W1810333662
PURB01000035
Gammaproteobacteria
Escherichia coli KOS_SD04_1507_Eco_073 [PURB]
20201
20125
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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