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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified bacterial viruses
Anticodon = TTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247532 (16 seq.)
>PHG181000770
KP010413
Myoviridae
Salmonella phage vB_SPuM_SP116 (KP010413)
26964
27041
+
Glu
TTC
[ENA]
¡û
>PHG181000825
KP143762
Myoviridae
Salmonella phage Mushroom (KP143762)
65490
65413
-
Glu
TTC
[ENA]
¡û
>PHG181003303
KX405003
Myoviridae
Salmonella phage BPS15Q2 (KX405003)
11080
11157
+
Glu
TTC
[ENA]
¡û
>PHG181004211
KY626162
Myoviridae
Salmonella phage Si3 (KY626162)
2238
2315
+
Glu
TTC
[ENA]
¡û
>PHG181005545
MF370225
Myoviridae
Salmonella phage ST11 (MF370225)
22980
23057
+
Glu
TTC
[ENA]
¡û
>PHG181006719
MG251391
Myoviridae
Salmonella virus VSe11 (MG251391)
23136
23213
+
Glu
TTC
[ENA]
¡û
>PHG181006735
MG251392
Myoviridae
Salmonella virus VSe102 (MG251392)
23169
23246
+
Glu
TTC
[ENA]
¡û
>PHG181006948
MG646669
Myoviridae
Salmonella phage BPS17W1 (MG646669)
77108
77031
-
Glu
TTC
[ENA]
¡û
>PHG181006983
MG646670
Myoviridae
Salmonella phage BPS15S6 (MG646670)
87212
87289
+
Glu
TTC
[ENA]
¡û
>PHG181006986
MG646671
Myoviridae
Salmonella phage BPS17S6 (MG646671)
9695
9772
+
Glu
TTC
[ENA]
¡û
>PHG181007452
MG969406
Myoviridae
Salmonella phage GE_vB_B3 (MG969406)
97434
97511
+
Glu
TTC
[ENA]
¡û
>PHG181007467
MG969407
Myoviridae
Salmonella phage GE_vB_BS (MG969407)
81646
81569
-
Glu
TTC
[ENA]
¡û
>PHG181007698
MH051914
Myoviridae
Enterobacteria phage vB_EcoM_IME338 (MH051914)
26751
26828
+
Glu
TTC
[ENA]
¡û
>PHG14101829
JX181816
unclassified bacterial viruses
Salmonella phage SBA-1781 (JX181816)
9662
9739
+
Glu
TTC
[ENA]
¡û
>PHG14101842
JX181822
Myoviridae
Salmonella phage SPT-1 (JX181822)
53600
53523
-
Glu
TTC
[ENA]
¡û
>PHG14103313
KM657822
Myoviridae
Escherichia phage vB_EcoM-VpaE1 DSS3-P1 (KM657822)
25567
25644
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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