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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified dsDNA phages
Anticodon = CAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337450 (4 seq.)
>WENV181982519
OHAH01000213
[OHAH] human gut metagenome; faeces
39246
39170
-
Ile2
CAT
[ENA]
¢þ
>WENV182619250
OJKH01001523
[OJKH] metagenome; faeces
4165
4241
+
Ile2
CAT
[ENA]
¢þ
>PHG14101023
JF974294
Siphoviridae
Aeromonas phage pIS4-A (JF974294)
25841
25765
-
Met
CAT
[ENA]
¡û
>PHG14101025
JF974312
unclassified dsDNA phages
Vibrio phage pYD38-A (JF974312)
46596
46672
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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