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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified dsDNA phages
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.697178 (19 seq.)
>WENV180363394
OBNY01041479
[OBNY] marine metagenome; ENVO:00002010
86
157
+
Asn
GTT
[ENA]
¢þ
>WENV170156401
CEOI01023749
[CEOI] marine metagenome genome assembly TARA_036_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1858
1787
-
Asn
GTT
[ENA]
¢þ
>WENV170210590
CEPW01000400
[CEPW] marine metagenome genome assembly TARA_038_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
93
167
+
Asn
GTT
[ENA]
¢þ
>WENV170474742
CEVH01170128
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
310
381
+
Asn
GTT
[ENA]
¢þ
>WENV170512547
CEVZ01206411
[CEVZ] marine metagenome genome assembly TARA_041_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
243
314
+
Asn
GTT
[ENA]
¢þ
>WENV170812635
MDSW01186809
[MDSW] marine metagenome; seawater
1934
2005
+
Asn
GTT
[ENA]
¢þ
>WENV170840758
MDSZ01210386
[MDSZ] marine metagenome; seawater
2987
2913
-
Asn
GTT
[ENA]
¢þ
>PHG181002645
KX349229
Myoviridae
Synechococcus phage S-RIM2 (KX349229)
18233
18306
+
Asn
GTT
[ENA]
¡û
>PHG181002657
KX349231
Myoviridae
Synechococcus phage S-RIM2 (KX349231)
18582
18655
+
Asn
GTT
[ENA]
¡û
>PHG181002675
KX349234
Myoviridae
Synechococcus phage S-RIM2 (KX349234)
18228
18301
+
Asn
GTT
[ENA]
¡û
>PHG181002909
KX349273
Myoviridae
Synechococcus phage S-RIM2 (KX349273)
18231
18304
+
Asn
GTT
[ENA]
¡û
>PHG181002915
KX349274
Myoviridae
Synechococcus phage S-RIM2 (KX349274)
18573
18646
+
Asn
GTT
[ENA]
¡û
>PHG181002921
KX349275
Myoviridae
Synechococcus phage S-RIM2 (KX349275)
18230
18303
+
Asn
GTT
[ENA]
¡û
>PHG181002933
KX349277
Myoviridae
Synechococcus phage S-RIM2 (KX349277)
18230
18303
+
Asn
GTT
[ENA]
¡û
>PHG181002939
KX349278
Myoviridae
Synechococcus phage S-RIM2 (KX349278)
18230
18303
+
Asn
GTT
[ENA]
¡û
>PHG181002951
KX349280
Myoviridae
Synechococcus phage S-RIM2 (KX349280)
18230
18303
+
Asn
GTT
[ENA]
¡û
>PHG181002969
KX349283
Myoviridae
Synechococcus phage S-RIM2 (KX349283)
18218
18291
+
Asn
GTT
[ENA]
¡û
>PHG181002975
KX349284
Myoviridae
Synechococcus phage S-RIM2 (KX349284)
18240
18313
+
Asn
GTT
[ENA]
¡û
>PHG14100747
HQ634189
unclassified dsDNA phages
Cyanophage Syn30 (HQ634189)
35582
35511
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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