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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified dsDNA phages
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525378 (9 seq.)
>WENV180588618
OCOP01120379
[OCOP] marine metagenome; water
211
137
-
Ala
TGC
[ENA]
¢þ
>WENV180637517
OCRG01035296
[OCRG] marine metagenome; seawater
308
382
+
Ala
TGC
[ENA]
¢þ
>WENV170157403
CEOJ01057644
[CEOJ] marine metagenome genome assembly TARA_034_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6506
6578
+
Ala
TGC
[ENA]
¢þ
>WENV170161769
CEOL01007493
[CEOL] marine metagenome genome assembly TARA_038_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
982
910
-
Ala
TGC
[ENA]
¢þ
>WENV170812634
MDSW01186809
[MDSW] marine metagenome; seawater
1621
1695
+
Ala
TGC
[ENA]
¢þ
>WENV170833466
MDSZ01080313
[MDSZ] marine metagenome; seawater
789
862
+
Ala
TGC
[ENA]
¢þ
>WENV170916690
MDTE01181899
[MDTE] marine metagenome; seawater
841
913
+
Ala
TGC
[ENA]
¢þ
>PHG14100746
HQ634189
unclassified dsDNA phages
Cyanophage Syn30 (HQ634189)
35895
35821
-
Ala
TGC
[ENA]
¡û
>WENV036836
AACY021811021
Marine microbial communities from Global Ocean Sampling (GOS)
53
128
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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