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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
unclassified viruses
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298807 (9 seq.)
>C171110751
CP020604
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis FM03 [CP020604]
1170894
1170821
-
Pro
TGG
-
¡û
>PHG181004757
LT985568
unclassified viruses
Bacteriophage sp. (LT985568)
743
670
-
Pro
TGG
[ENA]
¡û
>PHG181004762
LT993224
unclassified viruses
Bacteriophage sp. (LT993224)
1370
1443
+
Pro
TGG
[ENA]
¡û
>W1911503422
OESF01000052
Bacillota
Lactococcus lactis [OESF]
9857
9784
-
Pro
TGG
[ENA]
¡û
>W1911503497
OESH01000011
Bacillota
Lactococcus lactis [OESH]
20699
20626
-
Pro
TGG
[ENA]
¡û
>W1911503575
OESI01000045
Bacillota
Lactococcus lactis [OESI]
17741
17668
-
Pro
TGG
[ENA]
¡û
>W1911503671
OESK01000083
Bacillota
Lactococcus lactis [OESK]
528
601
+
Pro
TGG
[ENA]
¡û
>W1911534472
OLMC01000052
Bacillota
Lactococcus lactis subsp. lactis CF112 [OLMC]
15963
15890
-
Pro
TGG
[ENA]
¡û
>W1911534534
OLME01000053
Bacillota
Lactococcus lactis subsp. lactis CF111 [OLME]
979
1052
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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