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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
viral fraction from Bay of British Colombia
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185812 (62 seq.)
>W1710864442
LMFW01000001
Alphaproteobacteria
Mesorhizobium sp. Root1471 [LMFW]
2944832
2944748
-
Leu
CAG
[ENA]
¡û
>W1710864648
LMGA01000001
Alphaproteobacteria
Mesorhizobium sp. Root554 [LMGA]
2944190
2944106
-
Leu
CAG
[ENA]
¡û
>W1711224166
LXTV01000097
Alphaproteobacteria
Hyphomonas sp. ND6WE1B [LXTV]
11969
12053
+
Leu
CAG
[ENA]
¡û
>W1711357147
MDHA01000065
Alphaproteobacteria
Thioclava sp. SK-1 [MDHA]
36147
36063
-
Leu
CAG
[ENA]
¡û
>W1711505945
MKVZ01000003
Alphaproteobacteria
Rhizobiales bacterium 63-22 [MKVZ]
21842
21926
+
Leu
CAG
[ENA]
¡û
>W131224025
AUCM01000008
Alphaproteobacteria
Gemmobacter nectariphilus DSM 15620 [AUCM]
110455
110539
+
Leu
CAG
[ENA]
¡û
>W131224026
AUCM01000008
Alphaproteobacteria
Gemmobacter nectariphilus DSM 15620 [AUCM]
110672
110756
+
Leu
CAG
[ENA]
¡û
>W131242040
CAAF010000008
Alphaproteobacteria
Mesorhizobium sp. STM 4661 [CAAF]
63244
63328
+
Leu
CAG
[ENA]
¡û
>W131250130
CAUM01000027
Alphaproteobacteria
Mesorhizobium metallidurans STM 2683 [CAUM]
22345
22429
+
Leu
CAG
[ENA]
¡û
>WENV180282436
OBIC01000001
[OBIC] beach sand metagenome; beach sand
139658
139574
-
Leu
CAG
[ENA]
¢þ
>WENV180293500
OBIY01000001
[OBIY] beach sand metagenome; beach sand
60048
59964
-
Leu
CAG
[ENA]
¢þ
>WENV180309270
OBJS01000007
[OBJS] beach sand metagenome; beach sand
39947
40031
+
Leu
CAG
[ENA]
¢þ
>W141066774
ARYH01000001
Alphaproteobacteria
Hyphomonas adhaerens MHS-3 [ARYH]
1228264
1228180
-
Leu
CAG
[ENA]
¡û
>W141066856
ARYJ01000005
Alphaproteobacteria
Hyphomonas jannaschiana VP2 [ARYJ]
233373
233289
-
Leu
CAG
[ENA]
¡û
>W141136047
AWFD01000001
Alphaproteobacteria
Hyphomonas sp. CY54-11-8 [AWFD]
590516
590432
-
Leu
CAG
[ENA]
¡û
>W141150776
AXAQ01000006
Cyanobacteriota
Mastigocoleus testarum BC008 [AXAQ]
220587
220671
+
Leu
CAG
[ENA]
¡û
>W141237275
BBJC01000001
Alphaproteobacteria
Falsirhodobacter sp. alg1 [BBJC]
595949
596033
+
Leu
CAG
[ENA]
¡û
>WENV182400532
OIEQ01000587
[OIEQ] human gut metagenome; human gut
16944
16860
-
Leu
CAG
[ENA]
¢þ
>WENV182400792
OIER01000030
[OIER] human gut metagenome; human gut
26916
27000
+
Leu
CAG
[ENA]
¢þ
>WENV182947098
OKVL01001232
[OKVL] human gut metagenome; human gut
4982
4898
-
Leu
CAG
[ENA]
¢þ
>WENV182948058
OKVN01001477
[OKVN] human gut metagenome; human gut
2712
2628
-
Leu
CAG
[ENA]
¢þ
>ENV08000183
ABLX01245021
viral fraction from Bay of British Colombia
86
2
-
Leu
CAG
[ENA]
¡û
>ENV08002585
ABPY01002868
microbial mat metagenome; Guerrero Negro Hypersaline Mat 10; altitude 310m AMSL; sample depth 1m below water level, 34-49mm depth into the mat
447
531
+
Leu
CAG
[ENA]
¡û
>WENV170229012
CEQG01063987
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
24379
24463
+
Leu
CAG
[ENA]
¢þ
>WENV170528704
CEWJ01066119
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8430
8514
+
Leu
CAG
[ENA]
¢þ
>WENV170779537
LZQP01000546
[LZQP] oil field metagenome; sample BH-FW-16 from oil reservoir
1833
1749
-
Leu
CAG
[ENA]
¢þ
>WENV170813623
MDSW01203614
[MDSW] marine metagenome; seawater
7451
7367
-
Leu
CAG
[ENA]
¢þ
>WENV170878514
MDTC01078184
[MDTC] marine metagenome; seawater
2126
2210
+
Leu
CAG
[ENA]
¢þ
>WENV170900538
MDTD01155766
[MDTD] marine metagenome; seawater
28718
28802
+
Leu
CAG
[ENA]
¢þ
>WENV170934104
MDTG01232489
[MDTG] marine metagenome; seawater
4376
4460
+
Leu
CAG
[ENA]
¢þ
>WENV170940654
MDTG01346867
[MDTG] marine metagenome; seawater
1
85
+
Leu
CAG
[ENA]
¢þ
>WENV170942699
MDTG01382761
[MDTG] marine metagenome; seawater
8051
8135
+
Leu
CAG
[ENA]
¢þ
>WENV170962130
MRWF01006625
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
62135
62051
-
Leu
CAG
[ENA]
¢þ
>WENV170963413
MRWG01000167
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
63791
63707
-
Leu
CAG
[ENA]
¢þ
>W141485027
JFZB01000005
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
144534
144618
+
Leu
CAG
[ENA]
¡û
>C181029159
CP017940
Alphaproteobacteria
Phyllobacterium zundukense Tri-48; RCAM 03910 [CP017940]
3699872
3699956
+
Leu
CAG
-
¡û
>W141702373
JMLL01000010
Alphaproteobacteria
Phyllobacterium sp. UNC302MFCol5.2 [JMLL]
1289270
1289354
+
Leu
CAG
[ENA]
¡û
>W1910004728
AWFE01000082
Alphaproteobacteria
Hyphomonas sp. GM-8P [AWFE]
9100
9016
-
Leu
CAG
[ENA]
¡û
>W1910443007
FWFS01000001
Alphaproteobacteria
Aquimixticola soesokkakensis CECT 8620 [FWFS]
45404
45488
+
Leu
CAG
[ENA]
¡û
>W1910547063
FZNM01000003
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
419982
420066
+
Leu
CAG
[ENA]
¡û
>W1910574822
JQHS01000001
Alphaproteobacteria
Falsirhodobacter deserti W402 [JQHS]
68031
67947
-
Leu
CAG
[ENA]
¡û
>W1910839903
MZMT01000049
Alphaproteobacteria
Phyllobacterium zundukense Tri-38 [MZMT]
23533
23449
-
Leu
CAG
[ENA]
¡û
>W1911397906
NWMQ01000006
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
66231
66315
+
Leu
CAG
[ENA]
¡û
>W1911405024
NWQG01000120
Alphaproteobacteria
Mesorhizobium sanjuanii BSA136 [NWQG]
36247
36163
-
Leu
CAG
[ENA]
¡û
>W1911495377
OBMT01000016
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
36465
36549
+
Leu
CAG
[ENA]
¡û
>W1810090779
PGGM01000001
Alphaproteobacteria
Phyllobacterium sophorae CCBAU 03422 [PGGM]
442666
442582
-
Leu
CAG
[ENA]
¡û
>W1810090823
PGGN01000001
Alphaproteobacteria
Phyllobacterium endophyticum PEPV15 [PGGN]
427586
427670
+
Leu
CAG
[ENA]
¡û
>W1810090899
PGGO01000014
Alphaproteobacteria
Phyllobacterium brassicacearum STM 196 [PGGO]
4740
4656
-
Leu
CAG
[ENA]
¡û
>W1810346631
PVBT01000003
Alphaproteobacteria
Phyllobacterium myrsinacearum DSM 5892 [PVBT]
202226
202310
+
Leu
CAG
[ENA]
¡û
>W1810444871
PZJX01000047
Alphaproteobacteria
Mesorhizobium helmanticense CSLC115N [PZJX]
65527
65611
+
Leu
CAG
[ENA]
¡û
>W1810489515
QBBV01000003
Alphaproteobacteria
Acuticoccus kandeliae J103 [QBBV]
579873
579789
-
Leu
CAG
[ENA]
¡û
>W1810608828
QGTP01000003
Alphaproteobacteria
Phyllobacterium myrsinacearum IAM 13584 [QGTP]
274315
274231
-
Leu
CAG
[ENA]
¡û
>W1810692932
QLKY01000002
Alphaproteobacteria
Phyllobacterium myrsinacearum HAMBI_1992 [QLKY]
408204
408120
-
Leu
CAG
[ENA]
¡û
>W1810759528
QPJM01000004
Alphaproteobacteria
Phyllobacterium bourgognense 31-25a [QPJM]
239797
239713
-
Leu
CAG
[ENA]
¡û
>W121085132
AKIZ01000035
Alphaproteobacteria
Phyllobacterium sp. YR531 [AKIZ]
214715
214631
-
Leu
CAG
[ENA]
¡û
>W1610726788
LMFW01000001
Alphaproteobacteria
Mesorhizobium sp. Root1471 [LMFW]
2944832
2944748
-
Leu
CAG
[ENA]
¡û
>W1610726994
LMGA01000001
Alphaproteobacteria
Mesorhizobium sp. Root554 [LMGA]
2944190
2944106
-
Leu
CAG
[ENA]
¡û
>W1611008537
LXTV01000097
Alphaproteobacteria
Hyphomonas sp. ND6WE1B [LXTV]
11969
12053
+
Leu
CAG
[ENA]
¡û
>W1710524718
FNIY01000002
Alphaproteobacteria
Phyllobacterium sp. OV277 [FNIY]
523515
523599
+
Leu
CAG
[ENA]
¡û
>W1710525506
FNJP01000002
Alphaproteobacteria
Phyllobacterium sp. YR620 [FNJP]
342636
342720
+
Leu
CAG
[ENA]
¡û
>W1710565639
FORJ01000001
Alphaproteobacteria
Phyllobacterium sp. CL33Tsu [FORJ]
1364200
1364284
+
Leu
CAG
[ENA]
¡û
>W1710608924
FXBL01000004
Alphaproteobacteria
Mesorhizobium australicum [FXBL]
868073
867989
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK