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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
viral fraction from Bay of British Colombia
Anticodon = TGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.581121 (2 seq.)
>ENV08000173
ABLX01169433
viral fraction from Bay of British Colombia
20
95
+
Thr
TGT
[ENA]
¡û
>WENV170596809
FUIF01014486
[FUIF] marine metagenome; marine
3178
3253
+
Thr
TGT
[ENA]
¢þ
Identical group No.746655 (2 seq.)
>WENV180382264
OBOS01181043
[OBOS] marine metagenome; ENVO 00002150
170
96
-
Thr
TGT
[ENA]
¢þ
>ENV08000182
ABLX01232306
viral fraction from Bay of British Colombia
22
96
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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