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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
viral fraction from Bay of British Colombia
Anticodon = TTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.519106 (3 seq.)
>ENV08000149
ABLX01055329
viral fraction from Bay of British Colombia
35
110
+
Lys
TTT
[ENA]
¡û
>WENV183700969
PDMW01181200
[PDMW] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated, low buoyant density
151
76
-
Lys
TTT
[ENA]
¢þ
>WENV183794612
PVBE010109752
[PVBE] marine metagenome; water
480
405
-
Lys
TTT
[ENA]
¢þ
Identical group No.630087 (1 seq.)
>ENV08000135
ABLX01008622
viral fraction from Bay of British Colombia
99
23
-
Lys
TTT
[ENA]
¡û
Identical group No.630088 (1 seq.)
>ENV08000136
ABLX01009511
viral fraction from Bay of British Colombia
98
23
-
Lys
TTT
[ENA]
¡û
Identical group No.630091 (1 seq.)
>ENV08000143
ABLX01030521
viral fraction from Bay of British Colombia
7
82
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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