This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GGT
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.279406 (2 seq.)
>PHG0500044
DQ398053
Myoviridae
Mycobacterium phage Catera Brazil-1 (DQ398053)
93747
93821
+
Thr
GGT
[ENA]
¡û
>PHG0500064
EU826467
Myoviridae
Mycobacterium phage Rizal N4 (EU826467)
93491
93565
+
Thr
GGT
[ENA]
¡û
Identical group No.504452 (3 seq.)
>PHG181005403
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
96097
96170
+
Thr
GGT
[ENA]
¡û
>PHG181005438
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
97481
97554
+
Thr
GGT
[ENA]
¡û
>PHG181005521
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
97147
97220
+
Thr
GGT
[ENA]
¡û
Identical group No.561450 (2 seq.)
>PHG181004998
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
94665
94738
+
Thr
GGT
[ENA]
¡û
>PHG181008623
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
4222
4149
-
Thr
GGT
[ENA]
¡û
Identical group No.581899 (2 seq.)
>PHG181008389
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
4218
4145
-
Thr
GGT
[ENA]
¡û
>PHG181008424
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
4882
4809
-
Thr
GGT
[ENA]
¡û
Identical group No.646285 (1 seq.)
>PHG181003679
KX925554
Myoviridae
Streptomyces phage BRock (KX925554)
104681
104606
-
Thr
GGT
[ENA]
¡û
Identical group No.669949 (22 seq.)
>PHG0100559
EU826468
Myoviridae
Mycobacterium phage Spud N4 (EU826468)
95171
95243
+
Thr
GGT
[ENA]
¡û
>PHG0100579
EU826469
Myoviridae
Mycobacterium phage ScottMcG N4 (EU826469)
94055
94127
+
Thr
GGT
[ENA]
¡û
>PHG0100600
EU826471
Myoviridae
Mycobacterium phage Cali N4 (EU826471)
95668
95740
+
Thr
GGT
[ENA]
¡û
>PHG181001234
KR080196
Myoviridae
Mycobacterium phage Momo (KR080196)
94305
94377
+
Thr
GGT
[ENA]
¡û
>PHG181001477
KT281790
Myoviridae
Mycobacterium phage HyRo (KT281790)
94634
94706
+
Thr
GGT
[ENA]
¡û
>PHG181001547
KT321476
Myoviridae
Mycobacterium phage Zeenon (KT321476)
95351
95423
+
Thr
GGT
[ENA]
¡û
>PHG181001647
KT365400
Myoviridae
Mycobacterium phage ErnieJ (KT365400)
94031
94103
+
Thr
GGT
[ENA]
¡û
>PHG181003509
KX721255
Myoviridae
Mycobacterium phage Yucca (KX721255)
95265
95337
+
Thr
GGT
[ENA]
¡û
>PHG181003535
KX721256
Myoviridae
Mycobacterium phage Erdmann (KX721256)
95725
95797
+
Thr
GGT
[ENA]
¡û
>PHG181003635
KX831080
Myoviridae
Mycobacterium phage Lukilu (KX831080)
95773
95845
+
Thr
GGT
[ENA]
¡û
>PHG181006180
MF919493
Myoviridae
Mycobacterium phage Audrick (MF919493)
94987
95059
+
Thr
GGT
[ENA]
¡û
>PHG181006203
MF919494
Myoviridae
Mycobacterium phage BeanWater (MF919494)
94349
94421
+
Thr
GGT
[ENA]
¡û
>PHG181006275
MF919513
Myoviridae
Mycobacterium phage Koguma (MF919513)
92907
92979
+
Thr
GGT
[ENA]
¡û
>PHG181006306
MF919527
Myoviridae
Mycobacterium phage Phox (MF919527)
95969
96041
+
Thr
GGT
[ENA]
¡û
>PHG181007664
MH051261
Myoviridae
Mycobacterium phage Tyke (MH051261)
96171
96243
+
Thr
GGT
[ENA]
¡û
>PHG181007965
MH316561
Myoviridae
Mycobacterium phage Derek (MH316561)
95357
95429
+
Thr
GGT
[ENA]
¡û
>PHG14100231
GQ303262
Myoviridae
Mycobacterium phage LRRHood ATCC 35860-B1 (GQ303262)
94763
94835
+
Thr
GGT
[ENA]
¡û
>PHG14100893
JF704096
Myoviridae
Mycobacterium phage Ghost MB56Spyo045 (JF704096)
95008
95080
+
Thr
GGT
[ENA]
¡û
>PHG14101077
JN204348
Myoviridae
Mycobacterium phage Sebata (JN204348)
96536
96608
+
Thr
GGT
[ENA]
¡û
>PHG14101269
JN699625
Myoviridae
Mycobacterium phage Wally ThreeOh3D2 (JN699625)
94521
94593
+
Thr
GGT
[ENA]
¡û
>PHG14102221
KC691257
Myoviridae
Mycobacterium phage Astraea Gb1 (KC691257)
94396
94468
+
Thr
GGT
[ENA]
¡û
>PHG14102242
KC748968
Myoviridae
Mycobacterium phage Gizmo Gb1 (KC748968)
96650
96722
+
Thr
GGT
[ENA]
¡û
Identical group No.684260 (11 seq.)
>PHG181006227
MF919495
Myoviridae
Mycobacterium phage Bigswole (MF919495)
97333
97405
+
Thr
GGT
[ENA]
¡û
>PHG181006249
MF919499
Myoviridae
Mycobacterium phage Daffodil (MF919499)
95056
95128
+
Thr
GGT
[ENA]
¡û
>PHG181007333
MG812493
Myoviridae
Mycobacterium phage NuevoMundo (MG812493)
97679
97751
+
Thr
GGT
[ENA]
¡û
>PHG181007355
MG812494
Myoviridae
Mycobacterium phage Pier (MG812494)
97221
97293
+
Thr
GGT
[ENA]
¡û
>PHG181007686
MH051266
Myoviridae
Mycobacterium phage MikeLiesIn (MH051266)
95939
96011
+
Thr
GGT
[ENA]
¡û
>PHG181007991
MH316567
Myoviridae
Mycobacterium phage ParkTD (MH316567)
95053
95125
+
Thr
GGT
[ENA]
¡û
>PHG14101290
JN699626
Myoviridae
Mycobacterium phage MoMoMixon (JN699626)
94567
94639
+
Thr
GGT
[ENA]
¡û
>PHG14101606
JQ911768
Myoviridae
Mycobacterium phage Ava3 Lu11 (JQ911768)
94488
94560
+
Thr
GGT
[ENA]
¡û
>PHG14102491
KF024734
Myoviridae
Mycobacterium phage Shrimp phi47:1 (KF024734)
96069
96141
+
Thr
GGT
[ENA]
¡û
>PHG14102996
KJ595575
Myoviridae
Mycobacterium phage Willis LMSP-25 (KJ595575)
94952
95024
+
Thr
GGT
[ENA]
¡û
>PHG14103358
KM881426
Myoviridae
Mycobacterium phage ZygoTaiga pEcSw (KM881426)
95972
96044
+
Thr
GGT
[ENA]
¡û
Identical group No.684273 (1 seq.)
>PHG181007167
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
63086
63160
+
Thr
GGT
[ENA]
¡û
Identical group No.684281 (2 seq.)
>PHG181001781
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
18147
18221
+
Thr
GGT
[ENA]
¡û
>PHG181007583
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
18193
18267
+
Thr
GGT
[ENA]
¡û
Identical group No.685814 (2 seq.)
>PHG181003559
KX752698
Myoviridae
Mycobacterium phage Tonenili (KX752698)
99449
99521
+
Thr
GGT
[ENA]
¡û
>PHG14100209
GQ303260
Myoviridae
Mycobacterium phage ET08 ATCC 35860-B1 (GQ303260)
94151
94223
+
Thr
GGT
[ENA]
¡û
Identical group No.685833 (3 seq.)
>PHG183001423
MG872839
Myoviridae
Mycobacterium phage LifeSavor (MG872839)
95214
95286
+
Thr
GGT
[ENA]
¡û
>PHG14300221
JN699627
Myoviridae
Mycobacterium phage Nappy (JN699627)
96131
96203
+
Thr
GGT
[ENA]
¡û
>PHG14300413
KF006817
Myoviridae
Mycobacterium phage Breeniome phi47:1 (KF006817)
94348
94420
+
Thr
GGT
[ENA]
¡û
Identical group No.711663 (9 seq.)
>PHG0100221
AY129337
Myoviridae
Mycobacterium phage Bxz1 PaP3 (AY129337)
97760
97832
+
Thr
GGT
[ENA]
¡û
>PHG181001626
KT365398
Myoviridae
Mycobacterium phage DTDevon (KT365398)
96829
96901
+
Thr
GGT
[ENA]
¡û
>PHG181003194
KX369583
Myoviridae
Mycobacterium phage Littleton (KX369583)
95465
95537
+
Thr
GGT
[ENA]
¡û
>PHG181003597
KX781992
Myoviridae
Mycobacterium phage Gabriel (KX781992)
94322
94394
+
Thr
GGT
[ENA]
¡û
>PHG14100941
JF704116
Myoviridae
Mycobacterium phage Drazdys (JF704116)
95372
95444
+
Thr
GGT
[ENA]
¡û
>PHG14101169
JN412592
Myoviridae
Mycobacterium phage LinStu Patience (JN412592)
95359
95431
+
Thr
GGT
[ENA]
¡û
>PHG14101199
JN624850
Myoviridae
Mycobacterium phage Pleione (JN624850)
95532
95604
+
Thr
GGT
[ENA]
¡û
>PHG14101247
JN699013
Myoviridae
Mycobacterium phage Pio ThreeOh3D2 (JN699013)
98416
98488
+
Thr
GGT
[ENA]
¡û
>PHG14102266
KC748970
Myoviridae
Mycobacterium phage ArcherS7 Gb1 (KC748970)
95335
95407
+
Thr
GGT
[ENA]
¡û
Identical group No.726564 (6 seq.)
>PHG181005333
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
94345
94417
+
Thr
GGT
[ENA]
¡û
>PHG181005367
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
97158
97230
+
Thr
GGT
[ENA]
¡û
>PHG181005485
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
96100
96172
+
Thr
GGT
[ENA]
¡û
>PHG181008503
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
95666
95738
+
Thr
GGT
[ENA]
¡û
>PHG181008688
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
96298
96370
+
Thr
GGT
[ENA]
¡û
>W1810079373
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
13033
13105
+
Thr
GGT
[ENA]
¡û
Identical group No.738455 (3 seq.)
>PHG181008539
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
98107
98179
+
Thr
GGT
[ENA]
¡û
>PHG181008573
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
99051
99123
+
Thr
GGT
[ENA]
¡û
>PHG181008652
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
97059
97131
+
Thr
GGT
[ENA]
¡û
Identical group No.744950 (1 seq.)
>PHG14100699
HQ615693
Myoviridae
Synechococcus phage S-CRM01 VH-P22 (HQ615693)
139738
139811
+
Thr
GGT
[ENA]
¡û
Identical group No.750765 (1 seq.)
>PHG181002139
KU682439
Myoviridae
Stenotrophomonas phage vB_SmaS-DLP_6 (KU682439)
110832
110906
+
Thr
GGT
[ENA]
¡û
Identical group No.760728 (1 seq.)
>PHG181007641
MH051260
Myoviridae
Mycobacterium phage InterFolia (MH051260)
97052
97124
+
Thr
GGT
[ENA]
¡û
Identical group No.778900 (1 seq.)
>PHG181007238
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
4890
4818
-
Thr
GGT
[ENA]
¡û
Identical group No.802048 (1 seq.)
>PHG181005997
MF668280
Myoviridae
Mycobacterium phage Phabba (MF668280)
93687
93758
+
Thr
GGT
[ENA]
¡û
Identical group No.806782 (1 seq.)
>PHG0100519
EU826466
Myoviridae
Mycobacterium phage Myrna N4 (EU826466)
94998
95069
+
Thr
GGT
[ENA]
¡û
Identical group No.826222 (1 seq.)
>PHG14102119
KC292026
unclassified archaeal dsDNA viruses
Halovirus HGTV-1 Gb1 (KC292026)
48952
48880
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK