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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AAC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281288 (7 seq.)
>R05100142
AP008218
Plant
Oryza sativa Japonica Group
25952047
25951971
-
Val
AAC
[RAP-DB]
¡û
>R05100327
AP008210
Plant
Oryza sativa Japonica Group
31941896
31941972
+
Val
AAC
[RAP-DB]
¡û
>R05100383
AP008211
Plant
Oryza sativa Japonica Group
22719889
22719965
+
Val
AAC
[RAP-DB]
¡û
>R05100428
AP008212
Plant
Oryza sativa Japonica Group
5948226
5948302
+
Val
AAC
[RAP-DB]
¡û
>R05100494
AP008214
Plant
Oryza sativa Japonica Group
5848458
5848534
+
Val
AAC
[RAP-DB]
¡û
>WENV11100094
ADWX01131754
Ant fungus garden metagenome, Atta colombica fungus garden
42
116
+
Val
AAC
[ENA]
¡û
>WENV11100113
ADWX01200380
Ant fungus garden metagenome, Atta colombica fungus garden
228
155
-
Val
AAC
[ENA]
¡û
Identical group No.281289 (16 seq.)
>R05100511
AP008214
Plant
Oryza sativa Japonica Group
26910265
26910341
+
Val
AAC
[RAP-DB]
¡û
>R05100512
AP008214
Plant
Oryza sativa Japonica Group
26912587
26912665
+
Val
AAC
[RAP-DB]
¡û
>R05100536
AP008215
Plant
Oryza sativa Japonica Group
13756602
13756680
+
Val
AAC
[RAP-DB]
¡û
>AD01000132
NC_003070
Plant
Arabidopsis thaliana
10963646
10963573
-
Val
AAC
[TAIR]
¡û
>AD01000134
NC_003070
Plant
Arabidopsis thaliana
8520363
8520290
-
Val
AAC
[TAIR]
¡û
>AD01000140
NC_003070
Plant
Arabidopsis thaliana
6076018
6075945
-
Val
AAC
[TAIR]
¡û
>AD01000147
NC_003070
Plant
Arabidopsis thaliana
4267061
4266988
-
Val
AAC
[TAIR]
¡û
>AD01000261
NC_003074
Plant
Arabidopsis thaliana
16885891
16885964
+
Val
AAC
[TAIR]
¡û
>AD01000263
NC_003074
Plant
Arabidopsis thaliana
16894163
16894236
+
Val
AAC
[TAIR]
¡û
>AD01000268
NC_003074
Plant
Arabidopsis thaliana
18507812
18507885
+
Val
AAC
[TAIR]
¡û
>AD01000279
NC_003074
Plant
Arabidopsis thaliana
22138723
22138796
+
Val
AAC
[TAIR]
¡û
>AD01000321
NC_003075
Plant
Arabidopsis thaliana
7185704
7185777
+
Val
AAC
[TAIR]
¡û
>AD01000379
NC_003076
Plant
Arabidopsis thaliana
530821
530896
+
Val
AAC
[TAIR]
¡û
>AD01000387
NC_003076
Plant
Arabidopsis thaliana
2993327
2993400
+
Val
AAC
[TAIR]
¡û
>AD01000430
NC_003076
Plant
Arabidopsis thaliana
25784115
25784188
+
Val
AAC
[TAIR]
¡û
>AD01000440
NC_003076
Plant
Arabidopsis thaliana
24140019
24139946
-
Val
AAC
[TAIR]
¡û
Identical group No.324101 (3 seq.)
>R05100260
AP008209
Plant
Oryza sativa Japonica Group
36233413
36233337
-
Val
AAC
[RAP-DB]
¡û
>R05100311
AP008210
Plant
Oryza sativa Japonica Group
11991113
11991189
+
Val
AAC
[RAP-DB]
¡û
>R05100395
AP008211
Plant
Oryza sativa Japonica Group
29461779
29461857
+
Val
AAC
[RAP-DB]
¡û
Identical group No.324102 (4 seq.)
>R05100042
AP008207
Plant
Oryza sativa Japonica Group
44789405
44789481
+
Val
AAC
[RAP-DB]
¡û
>R05100053
AP008207
Plant
Oryza sativa Japonica Group
39863063
39862987
-
Val
AAC
[RAP-DB]
¡û
>R05100264
AP008209
Plant
Oryza sativa Japonica Group
33338950
33338872
-
Val
AAC
[RAP-DB]
¡û
>R05100541
AP008215
Plant
Oryza sativa Japonica Group
20505107
20505185
+
Val
AAC
[RAP-DB]
¡û
Identical group No.324103 (1 seq.)
>R05100265
AP008209
Plant
Oryza sativa Japonica Group
33337051
33336973
-
Val
AAC
[RAP-DB]
¡û
Identical group No.324111 (1 seq.)
>R05300038
AP008209
Plant
Oryza sativa Japonica Group
33338015
33337937
-
Val
AAC
[RAP-DB]
¡û
Identical group No.393196 (1 seq.)
>AD01000262
NC_003074
Plant
Arabidopsis thaliana
16891639
16891712
+
Val
AAC
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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