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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AGA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151402 (2 seq.)
>AD03000013
NC_003070
Plant
Arabidopsis thaliana
21304520
21304603
+
Ser
AGA
[TAIR]
¡û
>AD03000015
NC_003070
Plant
Arabidopsis thaliana
21307592
21307675
+
Ser
AGA
[TAIR]
¡û
Identical group No.190917 (6 seq.)
>R05100052
AP008207
Plant
Oryza sativa Japonica Group
40160147
40160063
-
Ser
AGA
[RAP-DB]
¡û
>R05100200
AP008208
Plant
Oryza sativa Japonica Group
24543275
24543191
-
Ser
AGA
[RAP-DB]
¡û
>R05100203
AP008208
Plant
Oryza sativa Japonica Group
21991946
21991860
-
Ser
AGA
[RAP-DB]
¡û
>R05100258
AP008209
Plant
Oryza sativa Japonica Group
36327134
36327050
-
Ser
AGA
[RAP-DB]
¡û
>R05100381
AP008211
Plant
Oryza sativa Japonica Group
20691010
20691094
+
Ser
AGA
[RAP-DB]
¡û
>R05100485
AP008213
Plant
Oryza sativa Japonica Group
9437897
9437813
-
Ser
AGA
[RAP-DB]
¡û
Identical group No.196784 (3 seq.)
>R05100002
AP008207
Plant
Oryza sativa Japonica Group
181263
181347
+
Ser
AGA
[RAP-DB]
¡û
>R05100225
AP008208
Plant
Oryza sativa Japonica Group
4554973
4554889
-
Ser
AGA
[RAP-DB]
¡û
>R05100432
AP008212
Plant
Oryza sativa Japonica Group
27380978
27381062
+
Ser
AGA
[RAP-DB]
¡û
Identical group No.199439 (3 seq.)
>AD01000235
NC_003074
Plant
Arabidopsis thaliana
586085
586168
+
Ser
AGA
[TAIR]
¡û
>WENV11100050
ADWX01007872
Ant fungus garden metagenome, Atta colombica fungus garden
110
191
+
Ser
AGA
[ENA]
¡û
>WENV11100081
ADWX01081485
Ant fungus garden metagenome, Atta colombica fungus garden
110
191
+
Ser
AGA
[ENA]
¡û
Identical group No.205485 (1 seq.)
>AD01000265
NC_003074
Plant
Arabidopsis thaliana
17264579
17264662
+
Ser
AGA
[TAIR]
¡û
Identical group No.207304 (20 seq.)
>AD01000017
NC_003070
Plant
Arabidopsis thaliana
5380907
5380988
+
Ser
AGA
[TAIR]
¡û
>AD01000069
NC_003070
Plant
Arabidopsis thaliana
21270296
21270377
+
Ser
AGA
[TAIR]
¡û
>AD01000071
NC_003070
Plant
Arabidopsis thaliana
21273314
21273395
+
Ser
AGA
[TAIR]
¡û
>AD01000073
NC_003070
Plant
Arabidopsis thaliana
21276352
21276433
+
Ser
AGA
[TAIR]
¡û
>AD01000076
NC_003070
Plant
Arabidopsis thaliana
21280922
21281003
+
Ser
AGA
[TAIR]
¡û
>AD01000077
NC_003070
Plant
Arabidopsis thaliana
21282454
21282535
+
Ser
AGA
[TAIR]
¡û
>AD01000078
NC_003070
Plant
Arabidopsis thaliana
21283986
21284067
+
Ser
AGA
[TAIR]
¡û
>AD01000079
NC_003070
Plant
Arabidopsis thaliana
21285519
21285600
+
Ser
AGA
[TAIR]
¡û
>AD01000080
NC_003070
Plant
Arabidopsis thaliana
21287050
21287131
+
Ser
AGA
[TAIR]
¡û
>AD01000081
NC_003070
Plant
Arabidopsis thaliana
21288581
21288662
+
Ser
AGA
[TAIR]
¡û
>AD01000082
NC_003070
Plant
Arabidopsis thaliana
21291461
21291542
+
Ser
AGA
[TAIR]
¡û
>AD01000083
NC_003070
Plant
Arabidopsis thaliana
21294341
21294422
+
Ser
AGA
[TAIR]
¡û
>AD01000084
NC_003070
Plant
Arabidopsis thaliana
21297221
21297302
+
Ser
AGA
[TAIR]
¡û
>AD01000085
NC_003070
Plant
Arabidopsis thaliana
21300102
21300183
+
Ser
AGA
[TAIR]
¡û
>AD01000095
NC_003070
Plant
Arabidopsis thaliana
27393385
27393466
+
Ser
AGA
[TAIR]
¡û
>AD01000106
NC_003070
Plant
Arabidopsis thaliana
30237784
30237866
+
Ser
AGA
[TAIR]
¡û
>AD01000116
NC_003070
Plant
Arabidopsis thaliana
24487073
24486992
-
Ser
AGA
[TAIR]
¡û
>AD01000125
NC_003070
Plant
Arabidopsis thaliana
21883924
21883843
-
Ser
AGA
[TAIR]
¡û
>AD01000397
NC_003076
Plant
Arabidopsis thaliana
5358916
5358997
+
Ser
AGA
[TAIR]
¡û
>AD01000415
NC_003076
Plant
Arabidopsis thaliana
20756330
20756412
+
Ser
AGA
[TAIR]
¡û
Identical group No.208697 (1 seq.)
>R05100346
AP008210
Plant
Oryza sativa Japonica Group
22608214
22608130
-
Ser
AGA
[RAP-DB]
¡û
Identical group No.215900 (1 seq.)
>AD01000018
NC_003070
Plant
Arabidopsis thaliana
6038757
6038838
+
Ser
AGA
[TAIR]
¡û
Identical group No.215901 (2 seq.)
>AD01000068
NC_003070
Plant
Arabidopsis thaliana
21268787
21268868
+
Ser
AGA
[TAIR]
¡û
>AD01000070
NC_003070
Plant
Arabidopsis thaliana
21271805
21271886
+
Ser
AGA
[TAIR]
¡û
Identical group No.215902 (2 seq.)
>AD01000072
NC_003070
Plant
Arabidopsis thaliana
21274823
21274904
+
Ser
AGA
[TAIR]
¡û
>AD01000074
NC_003070
Plant
Arabidopsis thaliana
21277861
21277942
+
Ser
AGA
[TAIR]
¡û
Identical group No.215903 (1 seq.)
>AD01000075
NC_003070
Plant
Arabidopsis thaliana
21279390
21279471
+
Ser
AGA
[TAIR]
¡û
Identical group No.215905 (3 seq.)
>AD03000009
NC_003070
Plant
Arabidopsis thaliana
21295872
21295953
+
Ser
AGA
[TAIR]
¡û
>AD03000010
NC_003070
Plant
Arabidopsis thaliana
21298753
21298834
+
Ser
AGA
[TAIR]
¡û
>AD03000011
NC_003070
Plant
Arabidopsis thaliana
21301634
21301715
+
Ser
AGA
[TAIR]
¡û
Identical group No.215906 (2 seq.)
>AD03000012
NC_003070
Plant
Arabidopsis thaliana
21302983
21303064
+
Ser
AGA
[TAIR]
¡û
>AD03000014
NC_003070
Plant
Arabidopsis thaliana
21306055
21306136
+
Ser
AGA
[TAIR]
¡û
Identical group No.215907 (2 seq.)
>AD06000002
NC_003070
Plant
Arabidopsis thaliana
21290112
21290193
+
Ser
AGA
[TAIR]
¡û
>AD06000003
NC_003070
Plant
Arabidopsis thaliana
21292992
21293073
+
Ser
AGA
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK