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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AGC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462878 (29 seq.)
>R05300005
AP008207
Plant
Oryza sativa Japonica Group
41815808
41815733
-
Ala
AGC
[RAP-DB]
¡û
>R05300012
AP008217
Plant
Oryza sativa Japonica Group
25805803
25805878
+
Ala
AGC
[RAP-DB]
¡û
>R05300021
AP008218
Plant
Oryza sativa Japonica Group
2431683
2431608
-
Ala
AGC
[RAP-DB]
¡û
>R05300039
AP008209
Plant
Oryza sativa Japonica Group
33309020
33308945
-
Ala
AGC
[RAP-DB]
¡û
>R05300042
AP008209
Plant
Oryza sativa Japonica Group
14884007
14883932
-
Ala
AGC
[RAP-DB]
¡û
>R05300043
AP008209
Plant
Oryza sativa Japonica Group
10800302
10800227
-
Ala
AGC
[RAP-DB]
¡û
>R05300053
AP008210
Plant
Oryza sativa Japonica Group
18721586
18721663
+
Ala
AGC
[RAP-DB]
¡û
>R05300058
AP008211
Plant
Oryza sativa Japonica Group
25732344
25732421
+
Ala
AGC
[RAP-DB]
¡û
>R05300065
AP008212
Plant
Oryza sativa Japonica Group
31398385
31398462
+
Ala
AGC
[RAP-DB]
¡û
>R05300067
AP008212
Plant
Oryza sativa Japonica Group
3350249
3350174
-
Ala
AGC
[RAP-DB]
¡û
>R05300068
AP008212
Plant
Oryza sativa Japonica Group
2034215
2034140
-
Ala
AGC
[RAP-DB]
¡û
>R05300072
AP008213
Plant
Oryza sativa Japonica Group
27341410
27341487
+
Ala
AGC
[RAP-DB]
¡û
>R05300075
AP008214
Plant
Oryza sativa Japonica Group
18458518
18458593
+
Ala
AGC
[RAP-DB]
¡û
>R05300076
AP008214
Plant
Oryza sativa Japonica Group
18462851
18462928
+
Ala
AGC
[RAP-DB]
¡û
>R05300079
AP008215
Plant
Oryza sativa Japonica Group
22222685
22222608
-
Ala
AGC
[RAP-DB]
¡û
>R05300083
AP008216
Plant
Oryza sativa Japonica Group
21748616
21748691
+
Ala
AGC
[RAP-DB]
¡û
>R05300085
AP008216
Plant
Oryza sativa Japonica Group
19019852
19019775
-
Ala
AGC
[RAP-DB]
¡û
>AD03000003
NC_003070
Plant
Arabidopsis thaliana
2025356
2025428
+
Ala
AGC
[TAIR]
¡û
>AD03000004
NC_003070
Plant
Arabidopsis thaliana
2334822
2334894
+
Ala
AGC
[TAIR]
¡û
>AD03000022
NC_003071
Plant
Arabidopsis thaliana
706796
706869
+
Ala
AGC
[TAIR]
¡û
>AD03000032
NC_003071
Plant
Arabidopsis thaliana
846928
846854
-
Ala
AGC
[TAIR]
¡û
>AD03000033
NC_003074
Plant
Arabidopsis thaliana
10752431
10752504
+
Ala
AGC
[TAIR]
¡û
>AD03000037
NC_003074
Plant
Arabidopsis thaliana
10759465
10759392
-
Ala
AGC
[TAIR]
¡û
>AD03000044
NC_003075
Plant
Arabidopsis thaliana
7232871
7232798
-
Ala
AGC
[TAIR]
¡û
>AD03000047
NC_003076
Plant
Arabidopsis thaliana
15976287
15976359
+
Ala
AGC
[TAIR]
¡û
>AD03000050
NC_003076
Plant
Arabidopsis thaliana
24709665
24709740
+
Ala
AGC
[TAIR]
¡û
>AD03000053
NC_003076
Plant
Arabidopsis thaliana
22484843
22484769
-
Ala
AGC
[TAIR]
¡û
>AD03000060
NC_003076
Plant
Arabidopsis thaliana
2432335
2432263
-
Ala
AGC
[TAIR]
¡û
>AD03000062
NC_003076
Plant
Arabidopsis thaliana
150428
150354
-
Ala
AGC
[TAIR]
¡û
Identical group No.510292 (1 seq.)
>R05300013
AP008217
Plant
Oryza sativa Japonica Group
2332629
2332554
-
Ala
AGC
[RAP-DB]
¡û
Identical group No.510293 (1 seq.)
>R05300035
AP008209
Plant
Oryza sativa Japonica Group
12870201
12870276
+
Ala
AGC
[RAP-DB]
¡û
Identical group No.541272 (3 seq.)
>AD03000041
NC_003075
Plant
Arabidopsis thaliana
13454556
13454630
+
Ala
AGC
[TAIR]
¡û
>AD03000045
NC_003075
Plant
Arabidopsis thaliana
6905558
6905484
-
Ala
AGC
[TAIR]
¡û
>AD03000055
NC_003076
Plant
Arabidopsis thaliana
17459247
17459174
-
Ala
AGC
[TAIR]
¡û
Identical group No.587045 (1 seq.)
>AD03000028
NC_003071
Plant
Arabidopsis thaliana
13137308
13137235
-
Ala
AGC
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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