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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = AGG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.687893 (2 seq.)
>R05100093
AP008217
Plant
Oryza sativa Japonica Group
26314802
26314878
+
Pro
AGG
[RAP-DB]
¡û
>R05100094
AP008217
Plant
Oryza sativa Japonica Group
26315674
26315750
+
Pro
AGG
[RAP-DB]
¡û
Identical group No.687894 (21 seq.)
>WENV170660083
JXWS01135110
[JXWS] soil metagenome; rice field; elevated CO2
336
265
-
Pro
AGG
[ENA]
¢þ
>R05100007
AP008207
Plant
Oryza sativa Japonica Group
3733988
3734062
+
Pro
AGG
[RAP-DB]
¡û
>R05100095
AP008217
Plant
Oryza sativa Japonica Group
26316075
26316149
+
Pro
AGG
[RAP-DB]
¡û
>R05100098
AP008217
Plant
Oryza sativa Japonica Group
29565875
29565949
+
Pro
AGG
[RAP-DB]
¡û
>R05100108
AP008217
Plant
Oryza sativa Japonica Group
2852729
2852655
-
Pro
AGG
[RAP-DB]
¡û
>R05100125
AP008218
Plant
Oryza sativa Japonica Group
17758961
17759035
+
Pro
AGG
[RAP-DB]
¡û
>R05100133
AP008218
Plant
Oryza sativa Japonica Group
21377829
21377903
+
Pro
AGG
[RAP-DB]
¡û
>R05100135
AP008218
Plant
Oryza sativa Japonica Group
23120813
23120887
+
Pro
AGG
[RAP-DB]
¡û
>R05100166
AP008218
Plant
Oryza sativa Japonica Group
3076246
3076172
-
Pro
AGG
[RAP-DB]
¡û
>R05100377
AP008211
Plant
Oryza sativa Japonica Group
4262330
4262404
+
Pro
AGG
[RAP-DB]
¡û
>R05100439
AP008212
Plant
Oryza sativa Japonica Group
24739183
24739109
-
Pro
AGG
[RAP-DB]
¡û
>AD01000039
NC_003070
Plant
Arabidopsis thaliana
10099425
10099496
+
Pro
AGG
[TAIR]
¡û
>AD01000090
NC_003070
Plant
Arabidopsis thaliana
25829654
25829725
+
Pro
AGG
[TAIR]
¡û
>AD01000187
NC_003071
Plant
Arabidopsis thaliana
14353143
14353215
+
Pro
AGG
[TAIR]
¡û
>AD01000191
NC_003071
Plant
Arabidopsis thaliana
14356055
14356126
+
Pro
AGG
[TAIR]
¡û
>AD01000232
NC_003074
Plant
Arabidopsis thaliana
259634
259706
+
Pro
AGG
[TAIR]
¡û
>AD01000259
NC_003074
Plant
Arabidopsis thaliana
11075578
11075649
+
Pro
AGG
[TAIR]
¡û
>AD01000295
NC_003074
Plant
Arabidopsis thaliana
19392745
19392674
-
Pro
AGG
[TAIR]
¡û
>AD01000316
NC_003075
Plant
Arabidopsis thaliana
1390895
1390966
+
Pro
AGG
[TAIR]
¡û
>AD01000455
NC_003076
Plant
Arabidopsis thaliana
15827097
15827026
-
Pro
AGG
[TAIR]
¡û
>WENV11100049
ADWX01006057
Ant fungus garden metagenome, Atta colombica fungus garden
227
299
+
Pro
AGG
[ENA]
¡û
Identical group No.735147 (4 seq.)
>AD01000010
NC_003070
Plant
Arabidopsis thaliana
2879303
2879374
+
Pro
AGG
[TAIR]
¡û
>AD01000124
NC_003070
Plant
Arabidopsis thaliana
22040683
22040612
-
Pro
AGG
[TAIR]
¡û
>AD01000149
NC_003070
Plant
Arabidopsis thaliana
3431256
3431185
-
Pro
AGG
[TAIR]
¡û
>AD01000301
NC_003074
Plant
Arabidopsis thaliana
7567465
7567394
-
Pro
AGG
[TAIR]
¡û
Identical group No.745885 (1 seq.)
>R05100126
AP008218
Plant
Oryza sativa Japonica Group
19058923
19058997
+
Pro
AGG
[RAP-DB]
¡û
Identical group No.772284 (1 seq.)
>AD01000034
NC_003070
Plant
Arabidopsis thaliana
10096951
10097022
+
Pro
AGG
[TAIR]
¡û
Identical group No.772287 (1 seq.)
>AD01000114
NC_003070
Plant
Arabidopsis thaliana
26382225
26382153
-
Pro
AGG
[TAIR]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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