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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.220860 (8 seq.)
>R05100082
AP008207
Plant
Oryza sativa Japonica Group
2390104
2390019
-
Leu
CAG
[RAP-DB]
¡û
>R05100201
AP008208
Plant
Oryza sativa Japonica Group
22989760
22989677
-
Leu
CAG
[RAP-DB]
¡û
>R05100239
AP008209
Plant
Oryza sativa Japonica Group
15489414
15489497
+
Leu
CAG
[RAP-DB]
¡û
>R05100408
AP008211
Plant
Oryza sativa Japonica Group
22584080
22583997
-
Leu
CAG
[RAP-DB]
¡û
>R05100430
AP008212
Plant
Oryza sativa Japonica Group
25942723
25942806
+
Leu
CAG
[RAP-DB]
¡û
>R05100431
AP008212
Plant
Oryza sativa Japonica Group
26053889
26053974
+
Leu
CAG
[RAP-DB]
¡û
>R05100475
AP008213
Plant
Oryza sativa Japonica Group
26799004
26798921
-
Leu
CAG
[RAP-DB]
¡û
>R05100537
AP008215
Plant
Oryza sativa Japonica Group
15396392
15396475
+
Leu
CAG
[RAP-DB]
¡û
Identical group No.222458 (3 seq.)
>AD01000021
NC_003070
Plant
Arabidopsis thaliana
6488655
6488736
+
Leu
CAG
[TAIR]
¡û
>AD01000097
NC_003070
Plant
Arabidopsis thaliana
28027960
28028040
+
Leu
CAG
[TAIR]
¡û
>AD01000329
NC_003075
Plant
Arabidopsis thaliana
9289685
9289765
+
Leu
CAG
[TAIR]
¡û
Identical group No.228253 (1 seq.)
>R05100559
AP008215
Plant
Oryza sativa Japonica Group
7218575
7218490
-
Leu
CAG
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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