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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659558 (4 seq.)
>R05100110
AP008217
Plant
Oryza sativa Japonica Group
548934
548860
-
Pro
CGG
[RAP-DB]
¡û
>R05100324
AP008210
Plant
Oryza sativa Japonica Group
27513976
27514050
+
Pro
CGG
[RAP-DB]
¡û
>R05100518
AP008214
Plant
Oryza sativa Japonica Group
28043843
28043769
-
Pro
CGG
[RAP-DB]
¡û
>R05100545
AP008215
Plant
Oryza sativa Japonica Group
23576378
23576304
-
Pro
CGG
[RAP-DB]
¡û
Identical group No.687903 (1 seq.)
>R05100272
AP008209
Plant
Oryza sativa Japonica Group
23633057
23632983
-
Pro
CGG
[RAP-DB]
¡û
Identical group No.706794 (3 seq.)
>AD01000172
NC_003071
Plant
Arabidopsis thaliana
9137356
9137427
+
Pro
CGG
[TAIR]
¡û
>AD01000307
NC_003074
Plant
Arabidopsis thaliana
3622763
3622692
-
Pro
CGG
[TAIR]
¡û
>AD01000348
NC_003075
Plant
Arabidopsis thaliana
17149471
17149542
+
Pro
CGG
[TAIR]
¡û
Identical group No.735133 (1 seq.)
>AD01000190
NC_003071
Plant
Arabidopsis thaliana
14355137
14355209
+
Pro
CGG
[TAIR]
¡û
Identical group No.735148 (1 seq.)
>AD01000313
NC_003074
Plant
Arabidopsis thaliana
1707809
1707738
-
Pro
CGG
[TAIR]
¡û
Identical group No.745884 (1 seq.)
>R05100111
AP008218
Plant
Oryza sativa Japonica Group
311217
311291
+
Pro
CGG
[RAP-DB]
¡û
Identical group No.745888 (1 seq.)
>R05100168
AP008218
Plant
Oryza sativa Japonica Group
595335
595261
-
Pro
CGG
[RAP-DB]
¡û
Identical group No.762167 (1 seq.)
>R05100481
AP008213
Plant
Oryza sativa Japonica Group
16526857
16526783
-
Pro
CGG
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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