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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CTC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462875 (17 seq.)
>WENV170659611
JXWR01014323
[JXWR] soil metagenome; rice field; ambient CO2
73
145
+
Glu
CTC
[ENA]
¢þ
>R05100003
AP008207
Plant
Oryza sativa Japonica Group
415058
415133
+
Glu
CTC
[RAP-DB]
¡û
>R05100008
AP008207
Plant
Oryza sativa Japonica Group
5768841
5768918
+
Glu
CTC
[RAP-DB]
¡û
>R05100009
AP008207
Plant
Oryza sativa Japonica Group
7433983
7434058
+
Glu
CTC
[RAP-DB]
¡û
>R05100057
AP008207
Plant
Oryza sativa Japonica Group
37531266
37531191
-
Glu
CTC
[RAP-DB]
¡û
>R05100194
AP008208
Plant
Oryza sativa Japonica Group
34479016
34478941
-
Glu
CTC
[RAP-DB]
¡û
>R05100224
AP008208
Plant
Oryza sativa Japonica Group
5215283
5215208
-
Glu
CTC
[RAP-DB]
¡û
>R05100226
AP008208
Plant
Oryza sativa Japonica Group
4371948
4371873
-
Glu
CTC
[RAP-DB]
¡û
>R05100276
AP008209
Plant
Oryza sativa Japonica Group
11597714
11597639
-
Glu
CTC
[RAP-DB]
¡û
>R05100398
AP008211
Plant
Oryza sativa Japonica Group
27721921
27721846
-
Glu
CTC
[RAP-DB]
¡û
>R05100411
AP008211
Plant
Oryza sativa Japonica Group
19532532
19532457
-
Glu
CTC
[RAP-DB]
¡û
>R05100414
AP008211
Plant
Oryza sativa Japonica Group
17755202
17755127
-
Glu
CTC
[RAP-DB]
¡û
>R05100422
AP008211
Plant
Oryza sativa Japonica Group
935413
935338
-
Glu
CTC
[RAP-DB]
¡û
>R05100486
AP008213
Plant
Oryza sativa Japonica Group
8234922
8234847
-
Glu
CTC
[RAP-DB]
¡û
>R05100510
AP008214
Plant
Oryza sativa Japonica Group
26040494
26040569
+
Glu
CTC
[RAP-DB]
¡û
>R05100515
AP008214
Plant
Oryza sativa Japonica Group
27919299
27919374
+
Glu
CTC
[RAP-DB]
¡û
>R05100529
AP008215
Plant
Oryza sativa Japonica Group
1167276
1167351
+
Glu
CTC
[RAP-DB]
¡û
Identical group No.510286 (1 seq.)
>R05100255
AP008209
Plant
Oryza sativa Japonica Group
35957822
35957897
+
Glu
CTC
[RAP-DB]
¡û
Identical group No.510287 (1 seq.)
>R05100263
AP008209
Plant
Oryza sativa Japonica Group
35281032
35280957
-
Glu
CTC
[RAP-DB]
¡û
Identical group No.541260 (1 seq.)
>R05100058
AP008207
Plant
Oryza sativa Japonica Group
37528206
37528131
-
Glu
CTC
[RAP-DB]
¡û
Identical group No.541262 (1 seq.)
>R05300003
AP008207
Plant
Oryza sativa Japonica Group
29860073
29860148
+
Glu
CTC
[RAP-DB]
¡û
Identical group No.541263 (2 seq.)
>AD01000297
NC_003074
Plant
Arabidopsis thaliana
18997715
18997642
-
Glu
CTC
[TAIR]
¡û
>AD01000324
NC_003075
Plant
Arabidopsis thaliana
7814202
7814274
+
Glu
CTC
[TAIR]
¡û
Identical group No.541265 (1 seq.)
>AD01000330
NC_003075
Plant
Arabidopsis thaliana
10302001
10302073
+
Glu
CTC
[TAIR]
¡û
Identical group No.541269 (9 seq.)
>AD01000051
NC_003070
Plant
Arabidopsis thaliana
10756722
10756794
+
Glu
CTC
[TAIR]
¡û
>AD01000099
NC_003070
Plant
Arabidopsis thaliana
28407984
28408056
+
Glu
CTC
[TAIR]
¡û
>AD01000112
NC_003070
Plant
Arabidopsis thaliana
28373561
28373489
-
Glu
CTC
[TAIR]
¡û
>AD01000133
NC_003070
Plant
Arabidopsis thaliana
10207378
10207306
-
Glu
CTC
[TAIR]
¡û
>AD01000203
NC_003071
Plant
Arabidopsis thaliana
18956641
18956713
+
Glu
CTC
[TAIR]
¡û
>AD01000281
NC_003074
Plant
Arabidopsis thaliana
22775922
22775994
+
Glu
CTC
[TAIR]
¡û
>AD01000345
NC_003075
Plant
Arabidopsis thaliana
16556623
16556695
+
Glu
CTC
[TAIR]
¡û
>AD01000347
NC_003075
Plant
Arabidopsis thaliana
17130052
17130124
+
Glu
CTC
[TAIR]
¡û
>AD01000468
NC_003076
Plant
Arabidopsis thaliana
3030889
3030817
-
Glu
CTC
[TAIR]
¡û
Identical group No.564776 (1 seq.)
>R05100433
AP008212
Plant
Oryza sativa Japonica Group
27587612
27587687
+
Glu
CTC
[RAP-DB]
¡û
Identical group No.587034 (1 seq.)
>AD01000197
NC_003071
Plant
Arabidopsis thaliana
15916817
15916889
+
Glu
CTC
[TAIR]
¡û
Identical group No.604549 (1 seq.)
>R05100337
AP008210
Plant
Oryza sativa Japonica Group
28170963
28170888
-
Glu
CTC
[RAP-DB]
¡û
Identical group No.622085 (1 seq.)
>R05100405
AP008211
Plant
Oryza sativa Japonica Group
22953824
22953747
-
Glu
CTC
[RAP-DB]
¡û
Identical group No.648343 (1 seq.)
>R05100196
AP008208
Plant
Oryza sativa Japonica Group
27532896
27532821
-
Glu
CTC
[RAP-DB]
¡û
Identical group No.776276 (1 seq.)
>R05300078
AP008215
Plant
Oryza sativa Japonica Group
1179632
1179706
+
Glu
CTC
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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