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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TAT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352385 (1 seq.)
>R05100051
AP008207
Plant
Oryza sativa Japonica Group
40225338
40225262
-
Ile
TAT
[RAP-DB]
¡û
Identical group No.352388 (7 seq.)
>R05100078
AP008207
Plant
Oryza sativa Japonica Group
7812944
7812868
-
Ile
TAT
[RAP-DB]
¡û
>R05100380
AP008211
Plant
Oryza sativa Japonica Group
20651198
20651274
+
Ile
TAT
[RAP-DB]
¡û
>R05100595
AP008216
Plant
Oryza sativa Japonica Group
16571592
16571516
-
Ile
TAT
[RAP-DB]
¡û
>AD01000008
NC_003070
Plant
Arabidopsis thaliana
2177884
2177959
+
Ile
TAT
[TAIR]
¡û
>AD01000066
NC_003070
Plant
Arabidopsis thaliana
19847973
19848046
+
Ile
TAT
[TAIR]
¡û
>AD01000305
NC_003074
Plant
Arabidopsis thaliana
5068367
5068294
-
Ile
TAT
[TAIR]
¡û
>AD01000354
NC_003075
Plant
Arabidopsis thaliana
17276774
17276701
-
Ile
TAT
[TAIR]
¡û
Identical group No.393194 (1 seq.)
>AD01000239
NC_003074
Plant
Arabidopsis thaliana
1738791
1738864
+
Ile
TAT
[TAIR]
¡û
Identical group No.408669 (1 seq.)
>R05100121
AP008218
Plant
Oryza sativa Japonica Group
10081072
10081150
+
Ile
TAT
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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