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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TCC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659554 (6 seq.)
>R05100032
AP008207
Plant
Oryza sativa Japonica Group
37214692
37214766
+
Gly
TCC
[RAP-DB]
¡û
>R05100277
AP008209
Plant
Oryza sativa Japonica Group
11283509
11283433
-
Gly
TCC
[RAP-DB]
¡û
>R05100458
AP008213
Plant
Oryza sativa Japonica Group
3402352
3402426
+
Gly
TCC
[RAP-DB]
¡û
>R05100480
AP008213
Plant
Oryza sativa Japonica Group
23028607
23028533
-
Gly
TCC
[RAP-DB]
¡û
>R05100487
AP008214
Plant
Oryza sativa Japonica Group
1041314
1041390
+
Gly
TCC
[RAP-DB]
¡û
>R05100488
AP008214
Plant
Oryza sativa Japonica Group
1042601
1042675
+
Gly
TCC
[RAP-DB]
¡û
Identical group No.687895 (1 seq.)
>R05100100
AP008217
Plant
Oryza sativa Japonica Group
29691560
29691486
-
Gly
TCC
[RAP-DB]
¡û
Identical group No.706797 (13 seq.)
>R05100312
AP008210
Plant
Oryza sativa Japonica Group
19470111
19470185
+
Gly
TCC
[RAP-DB]
¡û
>AD01000009
NC_003070
Plant
Arabidopsis thaliana
2588525
2588596
+
Gly
TCC
[TAIR]
¡û
>AD01000146
NC_003070
Plant
Arabidopsis thaliana
4285958
4285887
-
Gly
TCC
[TAIR]
¡û
>AD01000215
NC_003071
Plant
Arabidopsis thaliana
12471844
12471773
-
Gly
TCC
[TAIR]
¡û
>AD01000216
NC_003071
Plant
Arabidopsis thaliana
11864225
11864154
-
Gly
TCC
[TAIR]
¡û
>AD01000264
NC_003074
Plant
Arabidopsis thaliana
17149752
17149823
+
Gly
TCC
[TAIR]
¡û
>AD01000299
NC_003074
Plant
Arabidopsis thaliana
16427112
16427041
-
Gly
TCC
[TAIR]
¡û
>AD01000368
NC_003075
Plant
Arabidopsis thaliana
10326036
10325965
-
Gly
TCC
[TAIR]
¡û
>AD01000390
NC_003076
Plant
Arabidopsis thaliana
3617058
3617129
+
Gly
TCC
[TAIR]
¡û
>AD01000410
NC_003076
Plant
Arabidopsis thaliana
18558845
18558916
+
Gly
TCC
[TAIR]
¡û
>AD01000423
NC_003076
Plant
Arabidopsis thaliana
23953942
23954013
+
Gly
TCC
[TAIR]
¡û
>AD01000424
NC_003076
Plant
Arabidopsis thaliana
23957430
23957501
+
Gly
TCC
[TAIR]
¡û
>AD01000465
NC_003076
Plant
Arabidopsis thaliana
3578366
3578295
-
Gly
TCC
[TAIR]
¡û
Identical group No.745886 (1 seq.)
>R05100145
AP008218
Plant
Oryza sativa Japonica Group
23243519
23243445
-
Gly
TCC
[RAP-DB]
¡û
Identical group No.757517 (1 seq.)
>R05100404
AP008211
Plant
Oryza sativa Japonica Group
23239936
23239862
-
Gly
TCC
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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