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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.324099 (6 seq.)
>R05100043
AP008207
Plant
Oryza sativa Japonica Group
44912187
44912265
+
Arg
TCG
[RAP-DB]
¡û
>R05100232
AP008209
Plant
Oryza sativa Japonica Group
9651732
9651808
+
Arg
TCG
[RAP-DB]
¡û
>R05100375
AP008211
Plant
Oryza sativa Japonica Group
3652019
3652095
+
Arg
TCG
[RAP-DB]
¡û
>AD01000120
NC_003070
Plant
Arabidopsis thaliana
22477847
22477772
-
Arg
TCG
[TAIR]
¡û
>AD01000128
NC_003070
Plant
Arabidopsis thaliana
19498492
19498419
-
Arg
TCG
[TAIR]
¡û
>AD01000148
NC_003070
Plant
Arabidopsis thaliana
3678849
3678774
-
Arg
TCG
[TAIR]
¡û
Identical group No.347495 (4 seq.)
>WENV170660005
JXWS01083300
[JXWS] soil metagenome; rice field; elevated CO2
720
795
+
Arg
TCG
[ENA]
¢þ
>AD01000107
NC_003070
Plant
Arabidopsis thaliana
30084070
30083994
-
Arg
TCG
[TAIR]
¡û
>AD01000309
NC_003074
Plant
Arabidopsis thaliana
2918486
2918413
-
Arg
TCG
[TAIR]
¡û
>AD01000477
NC_003076
Plant
Arabidopsis thaliana
588967
588892
-
Arg
TCG
[TAIR]
¡û
Identical group No.424050 (1 seq.)
>R05100374
AP008211
Plant
Oryza sativa Japonica Group
921864
921940
+
Arg
TCG
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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