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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.494027 (19 seq.)
>PL171000515
CP003553
Cyanobacteria
Nostoc sp. PCC 7524 plasmid:pNOS7524.01
2680
2607
-
Pseudo
CTA
[ENA]
¡û
>WENV171003377
NNBT01007710
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
11923
11996
+
Stop
CTA
[ENA]
¢þ
>WENV171003548
NNBU01000345
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
253
180
-
Stop
CTA
[ENA]
¢þ
>WENV171003645
NNBU01002748
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
3509
3436
-
Stop
CTA
[ENA]
¢þ
>C181137721
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
4437228
4437299
+
Lys
CTT
-
¡û
>W1910596226
LAGX01000061
Cyanobacteriota
Nostoc linckia z1 [LAGX]
25797
25868
+
STOP
CTA
[ENA]
¡û
>W1910596310
LAGY01000063
Cyanobacteriota
Nostoc linckia z2 [LAGY]
25798
25869
+
STOP
CTA
[ENA]
¡û
>W1910596391
LAGZ01000060
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
25798
25869
+
STOP
CTA
[ENA]
¡û
>W1910596473
LAHA01000057
Cyanobacteriota
Nostoc linckia z4 [LAHA]
25796
25867
+
STOP
CTA
[ENA]
¡û
>W1910596553
LAHB01000058
Cyanobacteriota
Nostoc linckia z6 [LAHB]
25789
25860
+
STOP
CTA
[ENA]
¡û
>W1910596624
LAHC01000058
Cyanobacteriota
Nostoc linckia z7 [LAHC]
26475
26404
-
STOP
CTA
[ENA]
¡û
>W1910596701
LAHD01000046
Cyanobacteriota
Nostoc linckia z8 [LAHD]
25796
25867
+
STOP
CTA
[ENA]
¡û
>W1910596769
LAHE01000039
Cyanobacteriota
Nostoc linckia z9 [LAHE]
26978
27049
+
STOP
CTA
[ENA]
¡û
>W1910596845
LAHF01000026
Cyanobacteriota
Nostoc linckia z13 [LAHF]
25780
25851
+
STOP
CTA
[ENA]
¡û
>W1910596957
LAHG01000043
Cyanobacteriota
Nostoc linckia z14 [LAHG]
26018
26089
+
STOP
CTA
[ENA]
¡û
>W1910597003
LAHH01000019
Cyanobacteriota
Nostoc linckia z15 [LAHH]
27701
27772
+
STOP
CTA
[ENA]
¡û
>W1910597128
LAHI01000051
Cyanobacteriota
Nostoc linckia z16 [LAHI]
25781
25852
+
STOP
CTA
[ENA]
¡û
>W1910597224
LAHJ01000049
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
55418
55489
+
STOP
CTA
[ENA]
¡û
>C161002499
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2279481
2279554
+
Pseudo
CTA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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