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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TCG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235962 (4 seq.)
>W1710871681
LMLL01000011
Gammaproteobacteria
Pseudomonas sp. Leaf58 [LMLL]
82849
82927
+
Arg
TCG
[ENA]
¡û
>WENV181191670
OEPS010159351
[OEPS] soil metagenome; soil
73
151
+
Arg
TCG
[ENA]
¢þ
>PL191001119
CP032678
Gammaproteobacteria
Pseudomonas sp. Leaf58 plasmid:pBASL58 (CP032678)
836454
836376
-
Arg
TCG
[ENA]
¡û
>W1610734027
LMLL01000011
Gammaproteobacteria
Pseudomonas sp. Leaf58 [LMLL]
82849
82927
+
Arg
TCG
[ENA]
¡û
Identical group No.251444 (6 seq.)
>WENV180318984
OBKM01124373
[OBKM] metagenome; water
24
103
+
Arg
TCG
[ENA]
¢þ
>PL191001468
CP040331
Euryarchaeota
Natrinema versiforme BOL5-4 plasmid:pNVE500 (CP040331)
23196
23117
-
Arg
TCG
[ENA]
¡û
>W1910006765
BBJP01000025
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
13996
14075
+
Arg
TCG
[ENA]
¡û
>W1910226887
FNFC01000032
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
7196
7117
-
Arg
TCG
[ENA]
¡û
>W1910230275
FOKW01000014
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
15393
15314
-
Arg
TCG
[ENA]
¡û
>W1910575020
JQKV01000005
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
183382
183461
+
Arg
TCG
[ENA]
¡û
Identical group No.254329 (2 seq.)
>PL191000891
CP031306
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed1 (CP031306)
52131
52056
-
Arg
TCG
[ENA]
¡û
>W1610012014
AOHY01000058
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
86084
86159
+
Arg
TCG
[ENA]
¡û
Identical group No.372732 (1 seq.)
>PL171000388
CP002214
Firmicutes
Paenibacillus polymyxa SC2 plasmid:pSC2
7508
7584
+
Arg
TCG
[ENA]
¡û
Identical group No.463010 (7 seq.)
>PL191001753
LR214963
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:9 (LR214963)
201522
201597
+
Arg
TCG
[ENA]
¡û
>PL191001829
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
305696
305621
-
Arg
TCG
[ENA]
¡û
>W1910002641
ATFG01000030
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
139974
139899
-
Arg
TCG
[ENA]
¡û
>W1910002676
ATFH01000026
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
80138
80063
-
Arg
TCG
[ENA]
¡û
>C09107684
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
73268
73193
-
Arg
TCG
[Ensembl]
¡û
>C11114256
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
615739
615664
-
Arg
TCG
[Ensembl]
¡û
>C11114291
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
692540
692465
-
Arg
TCG
[Ensembl]
¡û
Identical group No.563734 (1 seq.)
>PL171000384
CP002214
Firmicutes
Paenibacillus polymyxa SC2 plasmid:pSC2
6908
6983
+
Arg
TCG
[ENA]
¡û
Identical group No.712838 (3 seq.)
>PL171000198
AP018275
Cyanobacteria
Calothrix sp. NIES-4101 plasmid:plasmid2
11220
11292
+
Arg
TCG
[ENA]
¡û
>W141805233
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
2487373
2487445
+
Arg
TCG
[ENA]
¡û
>C151081766
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
2485218
2485290
+
Arg
TCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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