This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = ACT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19080 (1 seq.)
>SRA1052614
SRR035098.237654
454 Sequencing (SRP001819)
244
333
+
Ser
ACT
[SRA]
Identical group No.25001 (3 seq.)
>WENV170621995
FUWD013082987
[FUWD] metagenome; unknown
1545
1457
-
Ser
ACT
[ENA]
¢þ
>WENV170629412
FUWD013269723
[FUWD] metagenome; unknown
21070
20982
-
Ser
ACT
[ENA]
¢þ
>SRA1052477
SRR035098.211274
454 Sequencing (SRP001819)
191
103
-
Ser
ACT
[SRA]
Identical group No.32310 (6 seq.)
>WENV170627096
FUWD013231401
[FUWD] metagenome; unknown
42123
42036
-
Ser
ACT
[ENA]
¢þ
>WENV170628446
FUWD013246838
[FUWD] metagenome; unknown
42123
42036
-
Ser
ACT
[ENA]
¢þ
>SRA1023900
SRR035084.203751
454 Sequencing (SRP001805)
166
253
+
Ser
ACT
[SRA]
>SRA1024865
SRR035084.423958
454 Sequencing (SRP001805)
82
171
+
Ser
ACT
[SRA]
>SRA1046444
SRR035093.308313
454 Sequencing (SRP001814)
227
314
+
Ser
ACT
[SRA]
>SRA1046920
SRR035093.419026
454 Sequencing (SRP001814)
248
161
-
Ser
ACT
[SRA]
Identical group No.32314 (7 seq.)
>WENV170626976
FUWD013230590
[FUWD] metagenome; unknown
8006
7919
-
Ser
ACT
[ENA]
¢þ
>WENV170629311
FUWD013266799
[FUWD] metagenome; unknown
28667
28580
-
Ser
ACT
[ENA]
¢þ
>SRA1023193
SRR035084.33180
454 Sequencing (SRP001805)
225
138
-
Ser
ACT
[SRA]
>SRA1024346
SRR035084.304965
454 Sequencing (SRP001805)
137
224
+
Ser
ACT
[SRA]
>SRA1046853
SRR035093.399289
454 Sequencing (SRP001814)
133
46
-
Ser
ACT
[SRA]
>SRA1047211
SRR035093.483190
454 Sequencing (SRP001814)
176
263
+
Ser
ACT
[SRA]
>SRA1051034
SRR035096.73629
454 Sequencing (SRP001817)
110
23
-
Ser
ACT
[SRA]
Identical group No.32316 (5 seq.)
>WENV170620400
FUWD013031027
[FUWD] metagenome; unknown
4152
4241
+
Ser
ACT
[ENA]
¢þ
>WENV170628538
FUWD013248565
[FUWD] metagenome; unknown
4152
4241
+
Ser
ACT
[ENA]
¢þ
>SRA1027339
SRR035086.108661
454 Sequencing (SRP001807)
137
50
-
Ser
ACT
[SRA]
>SRA1047008
SRR035093.434889
454 Sequencing (SRP001814)
92
3
-
Ser
ACT
[SRA]
>SRA1050974
SRR035096.63840
454 Sequencing (SRP001817)
280
191
-
Ser
ACT
[SRA]
Identical group No.37620 (7 seq.)
>WENV170611924
FUWD012447837
[FUWD] metagenome; unknown
340
251
-
Ser
ACT
[ENA]
¢þ
>SRA1027531
SRR035086.143107
454 Sequencing (SRP001807)
350
261
-
Ser
ACT
[SRA]
>SRA1027546
SRR035086.145136
454 Sequencing (SRP001807)
349
260
-
Ser
ACT
[SRA]
>SRA1028055
SRR035086.248139
454 Sequencing (SRP001807)
350
261
-
Ser
ACT
[SRA]
>SRA1028400
SRR035086.318043
454 Sequencing (SRP001807)
350
261
-
Ser
ACT
[SRA]
>SRA1051926
SRR035098.104894
454 Sequencing (SRP001819)
199
288
+
Ser
ACT
[SRA]
>SRA1052566
SRR035098.229909
454 Sequencing (SRP001819)
165
254
+
Ser
ACT
[SRA]
Identical group No.60850 (1 seq.)
>SRA1003487
SRR002326.498148
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
16
103
+
Ser
ACT
[SRA]
Identical group No.63475 (1 seq.)
>SRA1005347
SRR006907.192675
metagenomic water samples (SRP000427)
129
215
+
Ser
ACT
[SRA]
Identical group No.147376 (1 seq.)
>SRA1019221
SRR035082.420326
454 Sequencing (SRP001803)
407
327
-
Ser
ACT
[SRA]
Identical group No.238074 (1 seq.)
>SRA1043770
SRR035092.172508
454 Sequencing (SRP001813)
200
124
-
Ser
ACT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK