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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CAA
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.104860 (1 seq.)
>VRL0100091
DQ491002
Phycodnaviridae
Paramecium bursaria Chlorella virus NY2A
194921
195006
+
Leu
CAA
[ENA]
¡û
Identical group No.122561 (1 seq.)
>VRL181000700
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
161685
161601
-
Leu
CAA
[ENA]
¡û
Identical group No.126441 (1 seq.)
>VRL181000073
JN225873
Phycodnaviridae
Ostreococcus tauri virus RT-2011 (JN225873)
119774
119689
-
Leu
CAA
[ENA]
¡û
Identical group No.129194 (1 seq.)
>VRL181000631
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
157368
157284
-
Leu
CAA
[ENA]
¡û
Identical group No.130179 (2 seq.)
>VRL0100098
DQ491003
Phycodnaviridae
Paramecium bursaria Chlorella virus AR158
172430
172514
+
Leu
CAA
[ENA]
¡û
>VRL182000014
JX997183
Phycodnaviridae
Paramecium bursaria Chlorella virus NYs1 (JX997183)
180656
180740
+
Leu
CAA
[ENA]
¡û
Identical group No.144728 (1 seq.)
>VRL181000510
KR921745
unclassifiedviruses
Mollivirus sibericum (KR921745)
249640
249723
+
Leu
CAA
[ENA]
¡û
Identical group No.147997 (2 seq.)
>VRL182000003
JX997166
Phycodnaviridae
Paramecium bursaria Chlorella virus CZ-2 (JX997166)
114640
114724
+
Leu
CAA
[ENA]
¡û
>VRL182000006
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
129885
129969
+
Leu
CAA
[ENA]
¡û
Identical group No.157063 (10 seq.)
>VRL0100079
AY653733
Mimiviridae
Acanthamoeba polyphaga mimivirus
1139168
1139250
+
Leu
CAA
[ENA]
¡û
>VRL181000040
HQ336222
Mimiviridae
Acanthamoeba polyphaga mimivirus (HQ336222)
1139240
1139322
+
Leu
CAA
[ENA]
¡û
>VRL181000408
KF493731
Mimiviridae
Hirudovirus strain Sangsue (KF493731)
41444
41362
-
Leu
CAA
[ENA]
¡û
>VRL181000413
KF527228
Mimiviridae
Mimivirus terra2 (KF527228)
993692
993610
-
Leu
CAA
[ENA]
¡û
>VRL181000421
KF959826
Mimiviridae
Samba virus (KF959826)
1139244
1139326
+
Leu
CAA
[ENA]
¡û
>VRL181000467
KM982403
Mimiviridae
Acanthamoeba polyphaga mimivirus Amazonia (KM982403)
1111310
1111392
+
Leu
CAA
[ENA]
¡û
>VRL181000501
AP017644
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus kasaii (AP017644)
1141259
1141341
+
Leu
CAA
[ENA]
¡û
>VRL181000507
AP017645
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus shirakomae (AP017645)
1141307
1141389
+
Leu
CAA
[ENA]
¡û
>VRL181000513
KT599914
Mimiviridae
Niemeyer virus (KT599914)
1257782
1257864
+
Leu
CAA
[ENA]
¡û
>VRL181000529
KU761889
Mimiviridae
Mimivirus Bombay (KU761889)
1138588
1138670
+
Leu
CAA
[ENA]
¡û
Identical group No.157066 (3 seq.)
>VRL181000075
JN258408
Mimiviridae
Megavirus chiliensis (JN258408)
17045
16963
-
Leu
CAA
[ENA]
¡û
>VRL181000535
KU877344
Mimiviridae
Powai lake megavirus (KU877344)
23219
23137
-
Leu
CAA
[ENA]
¡û
>VRL181000735
MG602508
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602508)
10405
10323
-
Leu
CAA
[ENA]
¡û
Identical group No.160098 (8 seq.)
>VRL181000080
JN885990
Mimiviridae
Megavirus courdo7 (JN885990)
333
251
-
Leu
CAA
[ENA]
¡û
>VRL181000081
JN885993
Mimiviridae
Megavirus courdo7 (JN885993)
51917
51999
+
Leu
CAA
[ENA]
¡û
>VRL181000089
JX885207
Mimiviridae
Megavirus lba (JX885207)
1216109
1216191
+
Leu
CAA
[ENA]
¡û
>VRL181000096
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
1227985
1228067
+
Leu
CAA
[ENA]
¡û
>VRL181000099
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
337
255
-
Leu
CAA
[ENA]
¡û
>VRL181000417
KF527229
Mimiviridae
Megavirus terra1 (KF527229)
952470
952388
-
Leu
CAA
[ENA]
¡û
>VRL181000730
MG602507
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602507)
1234354
1234436
+
Leu
CAA
[ENA]
¡û
>VRL181000745
MG807319
Mimiviridae
Megavirus vitis (MG807319)
20455
20373
-
Leu
CAA
[ENA]
¡û
Identical group No.162458 (2 seq.)
>VRL181000060
JF801956
Mimiviridae
Acanthamoeba castellanii mamavirus Hal-V (JF801956)
1150469
1150551
+
Leu
CAA
[ENA]
¡û
>VRL181000457
KM982401
Mimiviridae
Acanthamoeba polyphaga mimivirus Oyster (KM982401)
1122275
1122357
+
Leu
CAA
[ENA]
¡û
Identical group No.162459 (1 seq.)
>VRL181000461
KM982402
Mimiviridae
Acanthamoeba polyphaga mimivirus Kroon (KM982402)
1141337
1141419
+
Leu
CAA
[ENA]
¡û
Identical group No.164173 (1 seq.)
>VRL183000079
JX997168
Phycodnaviridae
Acanthocystis turfacea Chlorella virus GM0701.1 (JX997168)
90791
90874
+
Leu
CAA
[ENA]
¡û
Identical group No.166471 (1 seq.)
>VRL0300015
AJ890364
Phycodnaviridae
Emiliania huxleyi virus 86
39441
39339
-
Leu
CAA
[ENA]
¡û
Identical group No.171598 (2 seq.)
>VRL181000748
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
6895
6977
+
Leu
CAA
[ENA]
¡û
>VRL181000755
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
20231
20149
-
Leu
CAA
[ENA]
¡û
Identical group No.171599 (2 seq.)
>VRL181000751
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
1086240
1086322
+
Leu
CAA
[ENA]
¡û
>VRL181000753
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
32007
31925
-
Leu
CAA
[ENA]
¡û
Identical group No.172856 (1 seq.)
>VRL181000380
KC008572
Mimiviridae
Moumouvirus goulette (KC008572)
1016543
1016625
+
Leu
CAA
[ENA]
¡û
Identical group No.198335 (1 seq.)
>VRL181000524
KT820662
Phycodnaviridae
Chrysochromulina ericina virus (KT820662)
74562
74479
-
Leu
CAA
[ENA]
¡û
Identical group No.218388 (13 seq.)
>VRL0100022
AB011503
Phycodnaviridae
Paramecium bursaria Chlorella virus EN5
1
81
+
Leu
CAA
[ENA]
¡û
>VRL0100038
AB011505
Phycodnaviridae
Paramecium bursaria Chlorella virus T1
67
150
+
Leu
CAA
[ENA]
¡û
>VRL181000049
JF411744
Phycodnaviridae
Paramecium bursaria Chlorella virus 1 (JF411744)
164946
165026
+
Leu
CAA
[ENA]
¡û
>VRL181000100
JX997153
Phycodnaviridae
Paramecium bursaria Chlorella virus AN69C (JX997153)
165245
165325
+
Leu
CAA
[ENA]
¡û
>VRL181000172
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
151880
151960
+
Leu
CAA
[ENA]
¡û
>VRL181000200
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
153724
153804
+
Leu
CAA
[ENA]
¡û
>VRL181000235
JX997169
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-3A (JX997169)
159156
159236
+
Leu
CAA
[ENA]
¡û
>VRL181000246
JX997170
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-5-2s1 (JX997170)
175844
175927
+
Leu
CAA
[ENA]
¡û
>VRL181000251
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
128750
128833
+
Leu
CAA
[ENA]
¡û
>VRL181000261
JX997172
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1D (JX997172)
134220
134300
+
Leu
CAA
[ENA]
¡û
>VRL181000270
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
157948
158028
+
Leu
CAA
[ENA]
¡û
>VRL181000315
JX997179
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-4 (JX997179)
167202
167282
+
Leu
CAA
[ENA]
¡û
>VRL181000338
JX997182
Phycodnaviridae
Paramecium bursaria Chlorella virus NY-2B (JX997182)
169407
169490
+
Leu
CAA
[ENA]
¡û
Identical group No.219451 (1 seq.)
>VRL181000588
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
168820
168903
+
Leu
CAA
[ENA]
¡û
Identical group No.220536 (1 seq.)
>VRL181000699
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
161806
161725
-
Leu
CAA
[ENA]
¡û
Identical group No.222909 (1 seq.)
>VRL183000108
JX997186
Phycodnaviridae
Acanthocystis turfacea Chlorella virus TN603.4.2 (JX997186)
92010
92090
+
Leu
CAA
[ENA]
¡û
Identical group No.224295 (1 seq.)
>VRL0100056
U42580
Phycodnaviridae
Paramecium bursaria Chlorella virus 1
164916
164996
+
Leu
CAA
[ENA]
¡û
Identical group No.226722 (1 seq.)
>VRL183000091
JX997176
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-1 (JX997176)
231813
231894
+
Leu
CAA
[ENA]
¡û
Identical group No.228516 (1 seq.)
>VRL181000596
KY322437
Phycodnaviridae
Tetraselmis virus 1 (KY322437)
373123
373205
+
Leu
CAA
[ENA]
¡û
Identical group No.230959 (1 seq.)
>VRL181000385
KC662249
Phycodnaviridae
Phaeocystis globosa virus 16T (KC662249)
176759
176838
+
Leu
CAA
[ENA]
¡û
Identical group No.627231 (1 seq.)
>VRL181000578
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
172860
172788
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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