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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CAT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.366491 (5 seq.)
>WENV182025428
OHCI01004176
[OHCI] human gut metagenome; feces
1774
1700
-
Ile2
CAT
[ENA]
¢þ
>WENV182117551
OHJE01003991
[OHJE] human gut metagenome; feces
2309
2235
-
Ile2
CAT
[ENA]
¢þ
>WENV182184864
OHOA01003769
[OHOA] human gut metagenome; feces
2462
2388
-
Ile2
CAT
[ENA]
¢þ
>WENV182259975
OHTI01005538
[OHTI] human gut metagenome; feces
1756
1682
-
Ile2
CAT
[ENA]
¢þ
>VRL181000440
KJ003983
Caudovirales
IAS virus (KJ003983)
98780
98706
-
Met
CAT
[ENA]
¡û
Identical group No.370693 (1 seq.)
>VRL181000144
JX997158
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Canal-1 (JX997158)
95218
95291
+
Met
CAT
[ENA]
¡û
Identical group No.388322 (1 seq.)
>VRL181000439
KJ003983
Caudovirales
IAS virus (KJ003983)
99175
99101
-
Met
CAT
[ENA]
¡û
Identical group No.428292 (1 seq.)
>VRL181000575
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
174079
174003
-
Met
CAT
[ENA]
¡û
Identical group No.536296 (2 seq.)
>VRL181000001
EF495130
Herpesvirales
Wood mouse herpesvirus Brest/An711 (EF495130)
2563
2636
+
Met
CAT
[ENA]
¡û
>VRL181000010
GQ169129
Herpesvirales
Wood mouse herpesvirus WM8 (GQ169129)
1088
1161
+
Met
CAT
[ENA]
¡û
Identical group No.564471 (3 seq.)
>VRL0100045
AF105037
Herpesvirales
Murid herpesvirus 4
1182
1255
+
Met
CAT
[ENA]
¡û
>VRL0100064
U97553
Herpesvirales
Murid herpesvirus 4
1182
1255
+
Met
CAT
[ENA]
¡û
>VRL0100067
Y11705
Herpesvirales
Murid herpesvirus 4
1077
1150
+
Met
CAT
[ENA]
¡û
Identical group No.627226 (1 seq.)
>VRL181000562
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187911
187836
-
Met
CAT
[ENA]
¡û
Identical group No.684207 (1 seq.)
>VRL181000710
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
135866
135795
-
Met
CAT
[ENA]
¡û
Identical group No.793230 (2 seq.)
>VRL181000645
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
135138
135067
-
Met
CAT
[ENA]
¡û
>VRL181000711
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
135793
135722
-
Met
CAT
[ENA]
¡û
Identical group No.814987 (1 seq.)
>VRL181000438
KJ003983
Caudovirales
IAS virus (KJ003983)
4790
4861
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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