This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CGT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480668 (1 seq.)
>VRL181000579
KX853513
Caudovirales
Virus Rctr41k (KX853513)
39498
39570
+
Thr
CGT
[ENA]
¡û
Identical group No.619405 (1 seq.)
>VRL181000296
JX997176
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-1 (JX997176)
231895
231967
+
Thr
CGT
[ENA]
¡û
Identical group No.627218 (2 seq.)
>VRL181000219
JX997166
Phycodnaviridae
Paramecium bursaria Chlorella virus CZ-2 (JX997166)
114726
114798
+
Thr
CGT
[ENA]
¡û
>VRL181000226
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
129971
130043
+
Thr
CGT
[ENA]
¡û
Identical group No.627224 (1 seq.)
>VRL181000554
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189062
188990
-
Thr
CGT
[ENA]
¡û
Identical group No.675527 (8 seq.)
>VRL0100090
DQ491001
Phycodnaviridae
Paramecium bursaria chlorella virus MT325
135496
135568
+
Thr
CGT
[ENA]
¡û
>VRL0100111
DQ890022
Phycodnaviridae
Paramecium bursaria Chlorella virus FR483
142738
142810
+
Thr
CGT
[ENA]
¡û
>VRL181000140
JX997157
Phycodnaviridae
Paramecium bursaria Chlorella virus Can18-4 (JX997157)
143700
143772
+
Thr
CGT
[ENA]
¡û
>VRL181000156
JX997159
Phycodnaviridae
Paramecium bursaria Chlorella virus CVA-1 (JX997159)
141201
141273
+
Thr
CGT
[ENA]
¡û
>VRL181000191
JX997163
Phycodnaviridae
Paramecium bursaria Chlorella virus CVM-1 (JX997163)
152764
152837
+
Thr
CGT
[ENA]
¡û
>VRL181000199
JX997164
Phycodnaviridae
Paramecium bursaria Chlorella virus CVR-1 (JX997164)
144266
144338
+
Thr
CGT
[ENA]
¡û
>VRL181000337
JX997181
Phycodnaviridae
Paramecium bursaria Chlorella virus NW665.2 (JX997181)
131315
131387
+
Thr
CGT
[ENA]
¡û
>VRL181000353
JX997184
Phycodnaviridae
Paramecium bursaria Chlorella virus OR0704.2.2 (JX997184)
118814
118886
+
Thr
CGT
[ENA]
¡û
Identical group No.719257 (1 seq.)
>VRL181000116
JX997154
Phycodnaviridae
Paramecium bursaria Chlorella virus AP110A (JX997154)
143123
143196
+
Thr
CGT
[ENA]
¡û
Identical group No.719260 (1 seq.)
>VRL181000171
JX997161
Phycodnaviridae
Paramecium bursaria Chlorella virus CVG-1 (JX997161)
141980
142052
+
Thr
CGT
[ENA]
¡û
Identical group No.760712 (1 seq.)
>VRL181000163
JX997160
Phycodnaviridae
Paramecium bursaria Chlorella virus CVB-1 (JX997160)
148474
148547
+
Thr
CGT
[ENA]
¡û
Identical group No.793233 (1 seq.)
>VRL181000718
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
114080
114009
-
Thr
CGT
[ENA]
¡û
Identical group No.802031 (1 seq.)
>VRL181000648
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
111541
111470
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK