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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = CTG
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.627221 (1 seq.)
>VRL181000550
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189465
189393
-
Gln
CTG
[ENA]
¡û
Identical group No.658334 (6 seq.)
>VRL0100027
AB011503
Phycodnaviridae
Paramecium bursaria Chlorella virus EN5
1642
1716
+
Gln
CTG
[ENA]
¡û
>VRL181000179
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
152537
152611
+
Gln
CTG
[ENA]
¡û
>VRL181000207
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
154381
154455
+
Gln
CTG
[ENA]
¡û
>VRL181000256
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
129477
129551
+
Gln
CTG
[ENA]
¡û
>VRL181000267
JX997172
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1D (JX997172)
134889
134963
+
Gln
CTG
[ENA]
¡û
>VRL181000277
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
158605
158679
+
Gln
CTG
[ENA]
¡û
Identical group No.760719 (1 seq.)
>VRL181000661
LC015649
Varidnaviria
Yellowstone lake phycodnavirus 3 (LC015649)
52689
52762
+
Gln
CTG
[ENA]
¡û
Identical group No.778880 (1 seq.)
>VRL181000658
LC015647
Varidnaviria
Yellowstone lake phycodnavirus 1 (LC015647)
60976
61047
+
Gln
CTG
[ENA]
¡û
Identical group No.789523 (1 seq.)
>VRL0200031
X53411
unclassifiedviruses
Non-A
3861
3934
+
Gln
CTG
[ENA]
¡û
Identical group No.793236 (1 seq.)
>VRL182000028
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
304095
304024
-
Gln
CTG
[ENA]
¡û
Identical group No.802015 (1 seq.)
>VRL181000611
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
294609
294538
-
Gln
CTG
[ENA]
¡û
Identical group No.821142 (1 seq.)
>VRL0100007
AB011501
Phycodnaviridae
Paramecium bursaria Chlorella virus CVK2
660
733
+
Gln
CTG
[ENA]
¡û
Identical group No.824441 (4 seq.)
>VRL0200017
L22858
Baculoviridae
Autographa californica nucleopolyhedrovirus
107991
108073
+
Gln
CTG
[ENA]
¡û
>VRL0200019
M25420
Baculoviridae
Autographa californica nucleopolyhedrovirus
667
749
+
Gln
CTG
[ENA]
¡û
>VRL0200021
M67451
Baculoviridae
Autographa californica nucleopolyhedrovirus
1215
1297
+
Gln
CTG
[ENA]
¡û
>VRL0200061
DQ457003
Baculoviridae
Plutella xylostella multiple nucleopolyhedrovirus
108521
108603
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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