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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GAA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.489576 (6 seq.)
>VRL0200063
DQ491001
Phycodnaviridae
Paramecium bursaria chlorella virus MT325
134718
134791
+
Phe
GAA
[ENA]
¡û
>VRL183000065
JX997157
Phycodnaviridae
Paramecium bursaria Chlorella virus Can18-4 (JX997157)
142042
142115
+
Phe
GAA
[ENA]
¡û
>VRL183000069
JX997160
Phycodnaviridae
Paramecium bursaria Chlorella virus CVB-1 (JX997160)
146708
146781
+
Phe
GAA
[ENA]
¡û
>VRL183000071
JX997161
Phycodnaviridae
Paramecium bursaria Chlorella virus CVG-1 (JX997161)
141199
141272
+
Phe
GAA
[ENA]
¡û
>VRL183000076
JX997166
Phycodnaviridae
Paramecium bursaria Chlorella virus CZ-2 (JX997166)
113672
113745
+
Phe
GAA
[ENA]
¡û
>VRL183000077
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
128832
128905
+
Phe
GAA
[ENA]
¡û
Identical group No.504361 (4 seq.)
>VRL183000060
JX997154
Phycodnaviridae
Paramecium bursaria Chlorella virus AP110A (JX997154)
142343
142416
+
Phe
GAA
[ENA]
¡û
>VRL183000068
JX997159
Phycodnaviridae
Paramecium bursaria Chlorella virus CVA-1 (JX997159)
140422
140495
+
Phe
GAA
[ENA]
¡û
>VRL183000073
JX997163
Phycodnaviridae
Paramecium bursaria Chlorella virus CVM-1 (JX997163)
151983
152056
+
Phe
GAA
[ENA]
¡û
>VRL183000074
JX997164
Phycodnaviridae
Paramecium bursaria Chlorella virus CVR-1 (JX997164)
143487
143560
+
Phe
GAA
[ENA]
¡û
Identical group No.504368 (1 seq.)
>VRL181000719
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
113827
113754
-
Phe
GAA
[ENA]
¡û
Identical group No.566592 (2 seq.)
>WENV180282085
OBIB01001927
[OBIB] human gut metagenome; human gut
3954
3881
-
Phe
GAA
[ENA]
¢þ
>VRL181000429
KJ003983
Caudovirales
IAS virus (KJ003983)
3400
3473
+
Phe
GAA
[ENA]
¡û
Identical group No.601794 (1 seq.)
>VRL181000470
KP033140
Polyomaviridae
Adelie penguin polyomavirus (KP033140)
2769
2841
+
Phe
GAA
[ENA]
¡û
Identical group No.760716 (1 seq.)
>VRL181000567
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187526
187455
-
Phe
GAA
[ENA]
¡û
Identical group No.802032 (1 seq.)
>VRL181000649
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
111359
111288
-
Phe
GAA
[ENA]
¡û
Identical group No.802033 (1 seq.)
>VRL181000650
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
111287
111216
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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