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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GTC
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247526 (1 seq.)
>VRL181000702
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
148731
148656
-
Asp
GTC
[ENA]
¡û
Identical group No.252353 (1 seq.)
>VRL181000633
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
145792
145717
-
Asp
GTC
[ENA]
¡û
Identical group No.266187 (1 seq.)
>VRL181000566
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187607
187531
-
Asp
GTC
[ENA]
¡û
Identical group No.308530 (15 seq.)
>WENV180044593
MOXS02012808
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
703
630
-
Asp
GTC
[ENA]
¢þ
>WENV180045740
MPLT02008675
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
240
165
-
Asp
GTC
[ENA]
¢þ
>WENV180046865
MPLT02144399
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
2490
2565
+
Asp
GTC
[ENA]
¢þ
>WENV180048335
MPLT02337164
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
471
544
+
Asp
GTC
[ENA]
¢þ
>WENV180050766
MPLU02166981
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
436
509
+
Asp
GTC
[ENA]
¢þ
>WENV180051176
MPLU02196139
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
25
98
+
Asp
GTC
[ENA]
¢þ
>WENV183797601
PVBE010347455
[PVBE] marine metagenome; water
1527
1600
+
Asp
GTC
[ENA]
¢þ
>WENV183803166
PVBE010818064
[PVBE] marine metagenome; water
1332
1259
-
Asp
GTC
[ENA]
¢þ
>WENV183806807
PVBE011148145
[PVBE] marine metagenome; water
792
719
-
Asp
GTC
[ENA]
¢þ
>WENV170318590
CESQ01060234
[CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
200
273
+
Asp
GTC
[ENA]
¢þ
>WENV170499960
CEVT01292179
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
366
293
-
Asp
GTC
[ENA]
¢þ
>WENV170610788
FUWD012055033
[FUWD] metagenome; unknown
234
158
-
Asp
GTC
[ENA]
¢þ
>WENV170800428
MDSV01229900
[MDSV] marine metagenome; seawater
550
625
+
Asp
GTC
[ENA]
¢þ
>VRL181000757
MH319740
Caudovirales
Marine virus AG-345-E08 (MH319740)
1836
1910
+
Asp
GTC
[ENA]
¡û
>WENV038795
AACY021961284
Marine microbial communities from Global Ocean Sampling (GOS)
687
611
-
Asp
GTC
[ENA]
Identical group No.669893 (9 seq.)
>VRL0100114
EF101928
Phycodnaviridae
Acanthocystis turfacea Chlorella virus 1
83991
84062
+
Asp
GTC
[ENA]
¡û
>VRL181000120
JX997155
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Br0604L (JX997155)
90718
90789
+
Asp
GTC
[ENA]
¡û
>VRL181000230
JX997168
Phycodnaviridae
Acanthocystis turfacea Chlorella virus GM0701.1 (JX997168)
90474
90545
+
Asp
GTC
[ENA]
¡û
>VRL181000288
JX997175
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MO0605SPH (JX997175)
92225
92296
+
Asp
GTC
[ENA]
¡û
>VRL181000302
JX997177
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-2 (JX997177)
106803
106874
+
Asp
GTC
[ENA]
¡û
>VRL181000310
JX997178
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-3 (JX997178)
87542
87613
+
Asp
GTC
[ENA]
¡û
>VRL181000358
JX997185
Phycodnaviridae
Acanthocystis turfacea Chlorella virus OR0704.3 (JX997185)
84217
84288
+
Asp
GTC
[ENA]
¡û
>VRL181000367
JX997186
Phycodnaviridae
Acanthocystis turfacea Chlorella virus TN603.4.2 (JX997186)
91321
91392
+
Asp
GTC
[ENA]
¡û
>VRL181000374
JX997187
Phycodnaviridae
Acanthocystis turfacea Chlorella virus WI0606 (JX997187)
93506
93577
+
Asp
GTC
[ENA]
¡û
Identical group No.669895 (1 seq.)
>VRL181000587
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
168747
168819
+
Asp
GTC
[ENA]
¡û
Identical group No.703701 (1 seq.)
>VRL181000128
JX997156
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Can0610SP (JX997156)
89199
89270
+
Asp
GTC
[ENA]
¡û
Identical group No.706530 (1 seq.)
>VRL0200074
EU255577
Baculoviridae
Helicoverpa armigera granulovirus
57078
57007
-
Asp
GTC
[ENA]
¡û
Identical group No.711655 (4 seq.)
>VRL181000183
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
153017
153089
+
Asp
GTC
[ENA]
¡û
>VRL181000211
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
154861
154933
+
Asp
GTC
[ENA]
¡û
>VRL181000260
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
129957
130029
+
Asp
GTC
[ENA]
¡û
>VRL181000281
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
159085
159157
+
Asp
GTC
[ENA]
¡û
Identical group No.719259 (1 seq.)
>VRL181000147
JX997158
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Canal-1 (JX997158)
95550
95621
+
Asp
GTC
[ENA]
¡û
Identical group No.740772 (1 seq.)
>VRL0100048
AF162221
Baculoviridae
Xestia c-nigrum granulovirus
60137
60066
-
Asp
GTC
[ENA]
¡û
Identical group No.744238 (2 seq.)
>VRL181000449
KJ668231
Herpesvirales
Falconid herpesvirus 1 S-18 (KJ668231)
8658
8730
+
Asp
GTC
[ENA]
¡û
>VRL181000541
KX589235
Herpesvirales
Columbid alphaherpesvirus 1 HLJ (KX589235)
8659
8731
+
Asp
GTC
[ENA]
¡û
Identical group No.744239 (2 seq.)
>VRL181000452
KJ668231
Herpesvirales
Falconid herpesvirus 1 S-18 (KJ668231)
139424
139353
-
Asp
GTC
[ENA]
¡û
>VRL181000544
KX589235
Herpesvirales
Columbid alphaherpesvirus 1 HLJ (KX589235)
139598
139527
-
Asp
GTC
[ENA]
¡û
Identical group No.793226 (1 seq.)
>VRL181000705
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
146444
146373
-
Asp
GTC
[ENA]
¡û
Identical group No.802026 (1 seq.)
>VRL181000636
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
145516
145445
-
Asp
GTC
[ENA]
¡û
Identical group No.820578 (2 seq.)
>VRL181000450
KJ668231
Herpesvirales
Falconid herpesvirus 1 S-18 (KJ668231)
11730
11800
+
Asp
GTC
[ENA]
¡û
>VRL181000542
KX589235
Herpesvirales
Columbid alphaherpesvirus 1 HLJ (KX589235)
11736
11806
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK