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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = GTG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.375262 (2 seq.)
>WENV180282088
OBIB01001927
[OBIB] human gut metagenome; human gut
3153
3079
-
His
GTG
[ENA]
¢þ
>VRL181000431
KJ003983
Caudovirales
IAS virus (KJ003983)
3553
3627
+
His
GTG
[ENA]
¡û
Identical group No.627228 (1 seq.)
>VRL181000564
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
187758
187685
-
His
GTG
[ENA]
¡û
Identical group No.684196 (4 seq.)
>WENV170707484
LNAP01022332
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
98
26
-
His
GTG
[ENA]
¢þ
>WENV170707592
LNAP01026544
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3233
3161
-
His
GTG
[ENA]
¢þ
>WENV170708241
LNAP01061773
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
98
26
-
His
GTG
[ENA]
¢þ
>VRL181000496
AP017398
Varidnaviria
Tokyovirus A1 (AP017398)
5265
5337
+
His
GTG
[ENA]
¡û
Identical group No.719264 (3 seq.)
>VRL181000084
JN885999
dsDNAviruses,noRNAstage
Moumouvirus Monve (JN885999)
200376
200305
-
His
GTG
[ENA]
¡û
>VRL181000092
JX962719
Mimiviridae
Acanthamoeba polyphaga moumouvirus M10A (JX962719)
96801
96872
+
His
GTG
[ENA]
¡û
>VRL181000590
KY110734
Mimiviridae
Saudi moumouvirus (KY110734)
113183
113254
+
His
GTG
[ENA]
¡û
Identical group No.738428 (1 seq.)
>VRL181000749
MG807320
Mimiviridae
Moumouvirus australiensis (MG807320)
146192
146263
+
His
GTG
[ENA]
¡û
Identical group No.744237 (1 seq.)
>VRL181000381
KC008572
Mimiviridae
Moumouvirus goulette (KC008572)
902448
902377
-
His
GTG
[ENA]
¡û
Identical group No.786849 (14 seq.)
>VRL0100076
AY653733
Mimiviridae
Acanthamoeba polyphaga mimivirus
352154
352224
+
His
GTG
[ENA]
¡û
>VRL181000037
HQ336222
Mimiviridae
Acanthamoeba polyphaga mimivirus (HQ336222)
352157
352227
+
His
GTG
[ENA]
¡û
>VRL181000057
JF801956
Mimiviridae
Acanthamoeba castellanii mamavirus Hal-V (JF801956)
363561
363631
+
His
GTG
[ENA]
¡û
>VRL181000063
JN036606
Mimiviridae
Acanthamoeba polyphaga mimivirus (JN036606)
250321
250391
+
His
GTG
[ENA]
¡û
>VRL181000405
KF493731
Mimiviridae
Hirudovirus strain Sangsue (KF493731)
828579
828509
-
His
GTG
[ENA]
¡û
>VRL181000410
KF527228
Mimiviridae
Mimivirus terra2 (KF527228)
116247
116317
+
His
GTG
[ENA]
¡û
>VRL181000418
KF959826
Mimiviridae
Samba virus (KF959826)
352157
352227
+
His
GTG
[ENA]
¡û
>VRL181000455
KM982401
Mimiviridae
Acanthamoeba polyphaga mimivirus Oyster (KM982401)
342613
342683
+
His
GTG
[ENA]
¡û
>VRL181000460
KM982402
Mimiviridae
Acanthamoeba polyphaga mimivirus Kroon (KM982402)
362472
362542
+
His
GTG
[ENA]
¡û
>VRL181000464
KM982403
Mimiviridae
Acanthamoeba polyphaga mimivirus Amazonia (KM982403)
324620
324690
+
His
GTG
[ENA]
¡û
>VRL181000498
AP017644
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus kasaii (AP017644)
355529
355599
+
His
GTG
[ENA]
¡û
>VRL181000504
AP017645
Mimiviridae
Acanthamoeba castellanii mimivirus Mimivirus shirakomae (AP017645)
355379
355449
+
His
GTG
[ENA]
¡û
>VRL181000511
KT599914
Mimiviridae
Niemeyer virus (KT599914)
394191
394261
+
His
GTG
[ENA]
¡û
>VRL181000526
KU761889
Mimiviridae
Mimivirus Bombay (KU761889)
353813
353883
+
His
GTG
[ENA]
¡û
Identical group No.793210 (6 seq.)
>VRL181000077
JN885990
Mimiviridae
Megavirus courdo7 (JN885990)
108723
108793
+
His
GTG
[ENA]
¡û
>VRL181000087
JX885207
Mimiviridae
Megavirus lba (JX885207)
112977
113047
+
His
GTG
[ENA]
¡û
>VRL181000532
KU877344
Mimiviridae
Powai lake megavirus (KU877344)
132183
132253
+
His
GTG
[ENA]
¡û
>VRL181000728
MG602507
Mimiviridae
Acanthamoeba polyphaga mimivirus (MG602507)
138456
138526
+
His
GTG
[ENA]
¡û
>VRL181000739
MG779309
Mimiviridae
Bandra megavirus (MG779309)
7478
7548
+
His
GTG
[ENA]
¡û
>VRL181000742
MG807319
Mimiviridae
Megavirus vitis (MG807319)
140465
140535
+
His
GTG
[ENA]
¡û
Identical group No.793228 (2 seq.)
>VRL181000642
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
136126
136055
-
His
GTG
[ENA]
¡û
>VRL181000708
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
138938
138867
-
His
GTG
[ENA]
¡û
Identical group No.823669 (1 seq.)
>VRL181000094
JX975216
Mimiviridae
Megavirus courdo11 (JX975216)
131731
131801
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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