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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199983 (7 seq.)
>WENV180282093
OBIB01001927
[OBIB] human gut metagenome; human gut
2240
2158
-
Leu
TAG
[ENA]
¢þ
>WENV182025154
OHCI01000178
[OHCI] human gut metagenome; feces
38035
37953
-
Leu
TAG
[ENA]
¢þ
>WENV182102756
OHHW01000055
[OHHW] human gut metagenome; feces
89
7
-
Leu
TAG
[ENA]
¢þ
>WENV182117284
OHJE01000202
[OHJE] human gut metagenome; feces
3819
3901
+
Leu
TAG
[ENA]
¢þ
>WENV182184600
OHOA01000191
[OHOA] human gut metagenome; feces
36652
36570
-
Leu
TAG
[ENA]
¢þ
>WENV182259760
OHTI01000310
[OHTI] human gut metagenome; feces
2342
2424
+
Leu
TAG
[ENA]
¢þ
>VRL181000436
KJ003983
Caudovirales
IAS virus (KJ003983)
4466
4548
+
Leu
TAG
[ENA]
¡û
Identical group No.232026 (1 seq.)
>VRL181000577
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
173215
173136
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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