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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TCC
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.460842 (7 seq.)
>VRL0400002
AB011503
Phycodnaviridae
Paramecium bursaria Chlorella virus EN5
1360
1434
+
Gly
TCC
[ENA]
¡û
>VRL0400043
DQ491002
Phycodnaviridae
Paramecium bursaria Chlorella virus NY2A
195104
195176
+
Gly
TCC
[ENA]
¡û
>VRL0400044
DQ491003
Phycodnaviridae
Paramecium bursaria Chlorella virus AR158
172612
172684
+
Gly
TCC
[ENA]
¡û
>VRL183000080
JX997170
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-5-2s1 (JX997170)
176228
176300
+
Gly
TCC
[ENA]
¡û
>VRL183000083
JX997172
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1D (JX997172)
134607
134681
+
Gly
TCC
[ENA]
¡û
>VRL183000101
JX997182
Phycodnaviridae
Paramecium bursaria Chlorella virus NY-2B (JX997182)
169791
169863
+
Gly
TCC
[ENA]
¡û
>VRL183000103
JX997183
Phycodnaviridae
Paramecium bursaria Chlorella virus NYs1 (JX997183)
180838
180910
+
Gly
TCC
[ENA]
¡û
Identical group No.627230 (1 seq.)
>VRL181000574
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
174153
174081
-
Gly
TCC
[ENA]
¡û
Identical group No.687773 (9 seq.)
>WENV180282091
OBIB01001927
[OBIB] human gut metagenome; human gut
2557
2485
-
Gly
TCC
[ENA]
¢þ
>WENV182025152
OHCI01000178
[OHCI] human gut metagenome; feces
38366
38294
-
Gly
TCC
[ENA]
¢þ
>WENV182102754
OHHW01000055
[OHHW] human gut metagenome; feces
420
348
-
Gly
TCC
[ENA]
¢þ
>WENV182117282
OHJE01000202
[OHJE] human gut metagenome; feces
3488
3560
+
Gly
TCC
[ENA]
¢þ
>WENV182156518
OHLU01000069
[OHLU] human gut metagenome; feces
201
129
-
Gly
TCC
[ENA]
¢þ
>WENV182184598
OHOA01000191
[OHOA] human gut metagenome; feces
36983
36911
-
Gly
TCC
[ENA]
¢þ
>WENV182259758
OHTI01000310
[OHTI] human gut metagenome; feces
2011
2083
+
Gly
TCC
[ENA]
¢þ
>WENV170999813
NFYX01007312
[NFYX] gut metagenome; feces
454
382
-
Gly
TCC
[ENA]
¢þ
>VRL181000434
KJ003983
Caudovirales
IAS virus (KJ003983)
4149
4221
+
Gly
TCC
[ENA]
¡û
Identical group No.719262 (1 seq.)
>VRL181000326
JX997180
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NTS-1 (JX997180)
104738
104809
+
Gly
TCC
[ENA]
¡û
Identical group No.740771 (1 seq.)
>VRL0100014
AB011502
Phycodnaviridae
Paramecium bursaria Chlorella virus UW1
387
460
+
Gly
TCC
[ENA]
¡û
Identical group No.745539 (1 seq.)
>VRL0100004
AB011501
Phycodnaviridae
Paramecium bursaria Chlorella virus CVK2
387
460
+
Gly
TCC
[ENA]
¡û
Identical group No.778879 (1 seq.)
>VRL181000657
LC015647
Varidnaviria
Yellowstone lake phycodnavirus 1 (LC015647)
60823
60894
+
Gly
TCC
[ENA]
¡û
Identical group No.786627 (2 seq.)
>WENV170443777
CEUX01012621
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
451
524
+
Gly
TCC
[ENA]
¢þ
>VRL181000756
MH319740
Caudovirales
Marine virus AG-345-E08 (MH319740)
1762
1835
+
Gly
TCC
[ENA]
¡û
Identical group No.786848 (9 seq.)
>VRL0100113
EF101928
Phycodnaviridae
Acanthocystis turfacea Chlorella virus 1
83898
83968
+
Gly
TCC
[ENA]
¡û
>VRL181000118
JX997155
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Br0604L (JX997155)
90526
90596
+
Gly
TCC
[ENA]
¡û
>VRL181000125
JX997156
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Can0610SP (JX997156)
88911
88981
+
Gly
TCC
[ENA]
¡û
>VRL181000143
JX997158
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Canal-1 (JX997158)
95125
95195
+
Gly
TCC
[ENA]
¡û
>VRL181000287
JX997175
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MO0605SPH (JX997175)
92132
92202
+
Gly
TCC
[ENA]
¡û
>VRL181000299
JX997177
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-2 (JX997177)
106518
106588
+
Gly
TCC
[ENA]
¡û
>VRL181000307
JX997178
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-3 (JX997178)
87257
87327
+
Gly
TCC
[ENA]
¡û
>VRL181000355
JX997185
Phycodnaviridae
Acanthocystis turfacea Chlorella virus OR0704.3 (JX997185)
83929
83999
+
Gly
TCC
[ENA]
¡û
>VRL181000373
JX997187
Phycodnaviridae
Acanthocystis turfacea Chlorella virus WI0606 (JX997187)
93413
93483
+
Gly
TCC
[ENA]
¡û
Identical group No.786850 (8 seq.)
>VRL181000104
JX997153
Phycodnaviridae
Paramecium bursaria Chlorella virus AN69C (JX997153)
165630
165702
+
Gly
TCC
[ENA]
¡û
>VRL181000176
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
152265
152337
+
Gly
TCC
[ENA]
¡û
>VRL181000204
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
154109
154181
+
Gly
TCC
[ENA]
¡û
>VRL181000239
JX997169
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-3A (JX997169)
159541
159613
+
Gly
TCC
[ENA]
¡û
>VRL181000253
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
129205
129277
+
Gly
TCC
[ENA]
¡û
>VRL181000274
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
158333
158405
+
Gly
TCC
[ENA]
¡û
>VRL181000319
JX997179
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-4 (JX997179)
167587
167659
+
Gly
TCC
[ENA]
¡û
>VRL181000584
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
167193
167265
+
Gly
TCC
[ENA]
¡û
Identical group No.789524 (1 seq.)
>VRL0200064
DQ491001
Phycodnaviridae
Paramecium bursaria chlorella virus MT325
134890
134960
+
Gly
TCC
[ENA]
¡û
Identical group No.793212 (9 seq.)
>VRL0100107
DQ890022
Phycodnaviridae
Paramecium bursaria Chlorella virus FR483
142129
142199
+
Gly
TCC
[ENA]
¡û
>VRL181000112
JX997154
Phycodnaviridae
Paramecium bursaria Chlorella virus AP110A (JX997154)
142515
142585
+
Gly
TCC
[ENA]
¡û
>VRL181000137
JX997157
Phycodnaviridae
Paramecium bursaria Chlorella virus Can18-4 (JX997157)
142214
142284
+
Gly
TCC
[ENA]
¡û
>VRL181000152
JX997159
Phycodnaviridae
Paramecium bursaria Chlorella virus CVA-1 (JX997159)
140594
140664
+
Gly
TCC
[ENA]
¡û
>VRL181000167
JX997161
Phycodnaviridae
Paramecium bursaria Chlorella virus CVG-1 (JX997161)
141371
141441
+
Gly
TCC
[ENA]
¡û
>VRL181000195
JX997164
Phycodnaviridae
Paramecium bursaria Chlorella virus CVR-1 (JX997164)
143659
143729
+
Gly
TCC
[ENA]
¡û
>VRL181000213
JX997166
Phycodnaviridae
Paramecium bursaria Chlorella virus CZ-2 (JX997166)
113844
113914
+
Gly
TCC
[ENA]
¡û
>VRL181000221
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
129004
129074
+
Gly
TCC
[ENA]
¡û
>VRL181000350
JX997184
Phycodnaviridae
Paramecium bursaria Chlorella virus OR0704.2.2 (JX997184)
118211
118281
+
Gly
TCC
[ENA]
¡û
Identical group No.802012 (2 seq.)
>VRL181000228
JX997168
Phycodnaviridae
Acanthocystis turfacea Chlorella virus GM0701.1 (JX997168)
90285
90355
+
Gly
TCC
[ENA]
¡û
>VRL181000283
JX997174
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MN0810.1 (JX997174)
102337
102407
+
Gly
TCC
[ENA]
¡û
Identical group No.802027 (1 seq.)
>VRL181000637
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
145444
145373
-
Gly
TCC
[ENA]
¡û
Identical group No.805591 (1 seq.)
>VRL181000365
JX997186
Phycodnaviridae
Acanthocystis turfacea Chlorella virus TN603.4.2 (JX997186)
91130
91200
+
Gly
TCC
[ENA]
¡û
Identical group No.805592 (1 seq.)
>VRL181000523
KT820662
Phycodnaviridae
Chrysochromulina ericina virus (KT820662)
383764
383694
-
Gly
TCC
[ENA]
¡û
Identical group No.812181 (2 seq.)
>VRL181000159
JX997160
Phycodnaviridae
Paramecium bursaria Chlorella virus CVB-1 (JX997160)
147865
147935
+
Gly
TCC
[ENA]
¡û
>VRL181000187
JX997163
Phycodnaviridae
Paramecium bursaria Chlorella virus CVM-1 (JX997163)
152155
152225
+
Gly
TCC
[ENA]
¡û
Identical group No.833162 (1 seq.)
>VRL181000333
JX997181
Phycodnaviridae
Paramecium bursaria Chlorella virus NW665.2 (JX997181)
130706
130776
+
Gly
TCC
[ENA]
¡û
Identical group No.833944 (1 seq.)
>VRL0100041
AB011505
Phycodnaviridae
Paramecium bursaria Chlorella virus T1
523
595
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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