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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TCT
HIT:
30 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241791 (2 seq.)
>VRL0100029
AB011503
Phycodnaviridae
Paramecium bursaria Chlorella virus EN5
1921
1997
+
Arg
TCT
[ENA]
¡û
>VRL181000269
JX997172
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1D (JX997172)
135168
135244
+
Arg
TCT
[ENA]
¡û
Identical group No.252352 (1 seq.)
>VRL181000227
JX997168
Phycodnaviridae
Acanthocystis turfacea Chlorella virus GM0701.1 (JX997168)
90112
90187
+
Arg
TCT
[ENA]
¡û
Identical group No.258318 (4 seq.)
>VRL0100037
AB011504
Phycodnaviridae
Paramecium bursaria Chlorella virus T16
1035
1111
+
Arg
TCT
[ENA]
¡û
>VRL0100063
U42580
Phycodnaviridae
Paramecium bursaria Chlorella virus 1
165776
165852
+
Arg
TCT
[ENA]
¡û
>VRL181000056
JF411744
Phycodnaviridae
Paramecium bursaria Chlorella virus 1 (JF411744)
165805
165881
+
Arg
TCT
[ENA]
¡û
>VRL181000324
JX997179
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-4 (JX997179)
168176
168252
+
Arg
TCT
[ENA]
¡û
Identical group No.261432 (1 seq.)
>VRL0100021
AB011502
Phycodnaviridae
Paramecium bursaria Chlorella virus UW1
1212
1286
+
Arg
TCT
[ENA]
¡û
Identical group No.266188 (1 seq.)
>VRL183000156
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
174956
174882
-
Arg
TCT
[ENA]
¡û
Identical group No.297286 (9 seq.)
>VRL0100112
EF101928
Phycodnaviridae
Acanthocystis turfacea Chlorella virus 1
83799
83873
+
Arg
TCT
[ENA]
¡û
>VRL181000117
JX997155
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Br0604L (JX997155)
90427
90501
+
Arg
TCT
[ENA]
¡û
>VRL181000124
JX997156
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Can0610SP (JX997156)
88812
88886
+
Arg
TCT
[ENA]
¡û
>VRL181000286
JX997175
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MO0605SPH (JX997175)
92033
92107
+
Arg
TCT
[ENA]
¡û
>VRL181000298
JX997177
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-2 (JX997177)
106419
106493
+
Arg
TCT
[ENA]
¡û
>VRL181000306
JX997178
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NE-JV-3 (JX997178)
87158
87232
+
Arg
TCT
[ENA]
¡û
>VRL181000354
JX997185
Phycodnaviridae
Acanthocystis turfacea Chlorella virus OR0704.3 (JX997185)
83830
83904
+
Arg
TCT
[ENA]
¡û
>VRL181000364
JX997186
Phycodnaviridae
Acanthocystis turfacea Chlorella virus TN603.4.2 (JX997186)
91031
91105
+
Arg
TCT
[ENA]
¡û
>VRL181000372
JX997187
Phycodnaviridae
Acanthocystis turfacea Chlorella virus WI0606 (JX997187)
93314
93388
+
Arg
TCT
[ENA]
¡û
Identical group No.318884 (1 seq.)
>VRL181000713
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
125477
125403
-
Arg
TCT
[ENA]
¡û
Identical group No.347518 (1 seq.)
>VRL183000169
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
125559
125485
-
Arg
TCT
[ENA]
¡û
Identical group No.359091 (7 seq.)
>VRL0100010
AB011501
Phycodnaviridae
Paramecium bursaria Chlorella virus CVK2
1034
1109
+
Arg
TCT
[ENA]
¡û
>VRL181000108
JX997153
Phycodnaviridae
Paramecium bursaria Chlorella virus AN69C (JX997153)
166188
166263
+
Arg
TCT
[ENA]
¡û
>VRL181000182
JX997162
Phycodnaviridae
Paramecium bursaria Chlorella virus CviKI (JX997162)
152912
152987
+
Arg
TCT
[ENA]
¡û
>VRL181000210
JX997165
Phycodnaviridae
Paramecium bursaria Chlorella virus CvsA1 (JX997165)
154756
154831
+
Arg
TCT
[ENA]
¡û
>VRL181000245
JX997169
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-3A (JX997169)
160355
160430
+
Arg
TCT
[ENA]
¡û
>VRL181000259
JX997171
Phycodnaviridae
Paramecium bursaria Chlorella virus KS1B (JX997171)
129852
129927
+
Arg
TCT
[ENA]
¡û
>VRL181000280
JX997173
Phycodnaviridae
Paramecium bursaria Chlorella virus MA-1E (JX997173)
158980
159055
+
Arg
TCT
[ENA]
¡û
Identical group No.359094 (1 seq.)
>VRL181000522
KT820662
Phycodnaviridae
Chrysochromulina ericina virus (KT820662)
424179
424252
+
Arg
TCT
[ENA]
¡û
Identical group No.370692 (1 seq.)
>VRL181000142
JX997158
Phycodnaviridae
Acanthocystis turfacea Chlorella virus Canal-1 (JX997158)
95026
95100
+
Arg
TCT
[ENA]
¡û
Identical group No.370696 (1 seq.)
>VRL181000446
KJ645900
Phycodnaviridae
Aureococcus anophagefferens virus (KJ645900)
148390
148317
-
Arg
TCT
[ENA]
¡û
Identical group No.428293 (1 seq.)
>VRL181000662
LC015649
Varidnaviria
Yellowstone lake phycodnavirus 3 (LC015649)
55483
55557
+
Arg
TCT
[ENA]
¡û
Identical group No.489574 (12 seq.)
>VRL0100086
DQ491001
Phycodnaviridae
Paramecium bursaria chlorella virus MT325
134814
134889
+
Arg
TCT
[ENA]
¡û
>VRL0100106
DQ890022
Phycodnaviridae
Paramecium bursaria Chlorella virus FR483
142053
142128
+
Arg
TCT
[ENA]
¡û
>VRL181000111
JX997154
Phycodnaviridae
Paramecium bursaria Chlorella virus AP110A (JX997154)
142439
142514
+
Arg
TCT
[ENA]
¡û
>VRL181000136
JX997157
Phycodnaviridae
Paramecium bursaria Chlorella virus Can18-4 (JX997157)
142138
142213
+
Arg
TCT
[ENA]
¡û
>VRL181000151
JX997159
Phycodnaviridae
Paramecium bursaria Chlorella virus CVA-1 (JX997159)
140518
140593
+
Arg
TCT
[ENA]
¡û
>VRL181000166
JX997161
Phycodnaviridae
Paramecium bursaria Chlorella virus CVG-1 (JX997161)
141295
141370
+
Arg
TCT
[ENA]
¡û
>VRL181000186
JX997163
Phycodnaviridae
Paramecium bursaria Chlorella virus CVM-1 (JX997163)
152079
152154
+
Arg
TCT
[ENA]
¡û
>VRL181000194
JX997164
Phycodnaviridae
Paramecium bursaria Chlorella virus CVR-1 (JX997164)
143583
143658
+
Arg
TCT
[ENA]
¡û
>VRL181000212
JX997166
Phycodnaviridae
Paramecium bursaria Chlorella virus CZ-2 (JX997166)
113768
113843
+
Arg
TCT
[ENA]
¡û
>VRL181000220
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
128928
129003
+
Arg
TCT
[ENA]
¡û
>VRL181000332
JX997181
Phycodnaviridae
Paramecium bursaria Chlorella virus NW665.2 (JX997181)
130630
130705
+
Arg
TCT
[ENA]
¡û
>VRL181000349
JX997184
Phycodnaviridae
Paramecium bursaria Chlorella virus OR0704.2.2 (JX997184)
118135
118210
+
Arg
TCT
[ENA]
¡û
Identical group No.504365 (3 seq.)
>VRL0100070
AJ890364
Phycodnaviridae
Emiliania huxleyi virus 86
203628
203554
-
Arg
TCT
[ENA]
¡û
>VRL181000398
KF481686
Phycodnaviridae
Emiliania huxleyi virus 145 EhV-145 (KF481686)
200928
200854
-
Arg
TCT
[ENA]
¡û
>VRL181000402
KF481688
Phycodnaviridae
Emiliania huxleyi virus 164 EhV-164 (KF481688)
202828
202754
-
Arg
TCT
[ENA]
¡û
Identical group No.536297 (2 seq.)
>VRL181000396
KF481685
Phycodnaviridae
Emiliania huxleyi virus 18 EhV-18 (KF481685)
227180
227254
+
Arg
TCT
[ENA]
¡û
>VRL181000400
KF481687
Phycodnaviridae
Emiliania huxleyi virus 156 EhV-156 (KF481687)
227951
228025
+
Arg
TCT
[ENA]
¡û
Identical group No.549118 (1 seq.)
>VRL181000006
FN429076
Phycodnaviridae
Emiliania huxleyi virus 99B1 (FN429076)
181723
181649
-
Arg
TCT
[ENA]
¡û
Identical group No.566598 (2 seq.)
>WENV180282342
OBIB01041055
[OBIB] human gut metagenome; human gut
152
225
+
Arg
TCT
[ENA]
¢þ
>VRL181000441
KJ003983
Caudovirales
IAS virus (KJ003983)
98463
98390
-
Arg
TCT
[ENA]
¡û
Identical group No.572041 (1 seq.)
>VRL181000392
KC662249
Phycodnaviridae
Phaeocystis globosa virus 16T (KC662249)
410486
410560
+
Arg
TCT
[ENA]
¡û
Identical group No.619404 (1 seq.)
>VRL181000295
JX997176
Phycodnaviridae
Paramecium bursaria Chlorella virus NE-JV-1 (JX997176)
230416
230488
+
Arg
TCT
[ENA]
¡û
Identical group No.627232 (1 seq.)
>VRL183000070
JX997160
Phycodnaviridae
Paramecium bursaria Chlorella virus CVB-1 (JX997160)
146807
146879
+
Arg
TCT
[ENA]
¡û
Identical group No.652605 (1 seq.)
>VRL181000598
KY322437
Phycodnaviridae
Tetraselmis virus 1 (KY322437)
373289
373363
+
Arg
TCT
[ENA]
¡û
Identical group No.669897 (2 seq.)
>VRL182000024
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
167464
167537
+
Arg
TCT
[ENA]
¡û
>VRL182000025
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
167563
167636
+
Arg
TCT
[ENA]
¡û
Identical group No.684195 (5 seq.)
>VRL0100092
DQ491002
Phycodnaviridae
Paramecium bursaria Chlorella virus NY2A
195029
195103
+
Arg
TCT
[ENA]
¡û
>VRL0100099
DQ491003
Phycodnaviridae
Paramecium bursaria Chlorella virus AR158
172537
172611
+
Arg
TCT
[ENA]
¡û
>VRL181000249
JX997170
Phycodnaviridae
Paramecium bursaria Chlorella virus IL-5-2s1 (JX997170)
176153
176227
+
Arg
TCT
[ENA]
¡û
>VRL181000341
JX997182
Phycodnaviridae
Paramecium bursaria Chlorella virus NY-2B (JX997182)
169716
169790
+
Arg
TCT
[ENA]
¡û
>VRL181000346
JX997183
Phycodnaviridae
Paramecium bursaria Chlorella virus NYs1 (JX997183)
180763
180837
+
Arg
TCT
[ENA]
¡û
Identical group No.684209 (1 seq.)
>VRL181000715
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
125330
125259
-
Arg
TCT
[ENA]
¡û
Identical group No.695866 (2 seq.)
>WENV180595636
OCPE01029622
[OCPE] marine metagenome; ENVO.00002150
158
85
-
Arg
TCT
[ENA]
¢þ
>VRL181000071
JN225873
Phycodnaviridae
Ostreococcus tauri virus RT-2011 (JN225873)
162171
162244
+
Arg
TCT
[ENA]
¡û
Identical group No.719261 (1 seq.)
>VRL181000325
JX997180
Phycodnaviridae
Acanthocystis turfacea Chlorella virus NTS-1 (JX997180)
104640
104713
+
Arg
TCT
[ENA]
¡û
Identical group No.722474 (2 seq.)
>WENV180282092
OBIB01001927
[OBIB] human gut metagenome; human gut
2479
2407
-
Arg
TCT
[ENA]
¢þ
>VRL181000435
KJ003983
Caudovirales
IAS virus (KJ003983)
4227
4299
+
Arg
TCT
[ENA]
¡û
Identical group No.772055 (1 seq.)
>VRL0100044
AB011505
Phycodnaviridae
Paramecium bursaria Chlorella virus T1
891
964
+
Arg
TCT
[ENA]
¡û
Identical group No.774989 (1 seq.)
>VRL181000282
JX997174
Phycodnaviridae
Acanthocystis turfacea Chlorella virus MN0810.1 (JX997174)
102168
102240
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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