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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TGT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.566593 (2 seq.)
>WENV180282094
OBIB01001927
[OBIB] human gut metagenome; human gut
2082
2009
-
Thr
TGT
[ENA]
¢þ
>VRL181000437
KJ003983
Caudovirales
IAS virus (KJ003983)
4624
4697
+
Thr
TGT
[ENA]
¡û
Identical group No.627222 (1 seq.)
>VRL181000551
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
189389
189317
-
Thr
TGT
[ENA]
¡û
Identical group No.669896 (1 seq.)
>VRL181000589
KX857749
Phycodnaviridae
Only Syngen Nebraska virus 5 (KX857749)
168904
168976
+
Thr
TGT
[ENA]
¡û
Identical group No.684202 (1 seq.)
>VRL181000693
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
286518
286446
-
Thr
TGT
[ENA]
¡û
Identical group No.760713 (1 seq.)
>VRL181000225
JX997167
Phycodnaviridae
Paramecium bursaria Chlorella virus Fr5L (JX997167)
129654
129725
+
Thr
TGT
[ENA]
¡û
Identical group No.774991 (1 seq.)
>VRL181000539
KX008963
Phycodnaviridae
Heterosigma akashiwo virus 01 (KX008963)
12827
12756
-
Thr
TGT
[ENA]
¡û
Identical group No.802022 (1 seq.)
>VRL181000624
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
280177
280106
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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