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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TTC
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.627225 (1 seq.)
>VRL181000559
KX853510
unclassifiedviruses
Virus Rctr197k (KX853510)
188280
188204
-
Glu
TTC
[ENA]
¡û
Identical group No.652604 (1 seq.)
>VRL181000597
KY322437
Phycodnaviridae
Tetraselmis virus 1 (KY322437)
373207
373280
+
Glu
TTC
[ENA]
¡û
Identical group No.684198 (1 seq.)
>VRL181000682
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
297857
297785
-
Glu
TTC
[ENA]
¡û
Identical group No.703704 (1 seq.)
>VRL181000614
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
288438
288366
-
Glu
TTC
[ENA]
¡û
Identical group No.703705 (1 seq.)
>VRL181000615
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
288365
288294
-
Glu
TTC
[ENA]
¡û
Identical group No.722473 (2 seq.)
>WENV180282081
OBIB01001927
[OBIB] human gut metagenome; human gut
4745
4673
-
Glu
TTC
[ENA]
¢þ
>VRL181000425
KJ003983
Caudovirales
IAS virus (KJ003983)
2609
2681
+
Glu
TTC
[ENA]
¡û
Identical group No.793216 (2 seq.)
>VRL181000612
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
288582
288512
-
Glu
TTC
[ENA]
¡û
>VRL181000680
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
298001
297930
-
Glu
TTC
[ENA]
¡û
Identical group No.793218 (1 seq.)
>VRL181000684
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
297712
297640
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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