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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1030396
SRR035087.274346
282274
Chlorobiota
CGC
Ala
>SRA1030064
SRR035087.222513
282414
Chlorobiota
TGC
Ala
>SRA1030912
SRR035087.346646
176477
Chlorobiota
CAT
Met
>SRA1029842
SRR035087.190696
176477
Chlorobiota
CAT
Met
>SRA1029993
SRR035087.213158
177501
Chlorobiota
GTG
His
>SRA1029252
SRR035087.98062
282094
Chlorobiota
GGT
Thr
>SRA1029075
SRR035087.69287
282094
Chlorobiota
GGT
Thr
>SRA1028807
SRR035087.12237
282094
Chlorobiota
GGT
Thr
>SRA1032338
SRR035087.608511
284284
Chlorobiota
GGC
Ala
>SRA1032320
SRR035087.604511
284284
Chlorobiota
GGC
Ala
>SRA1031108
SRR035087.374994
284284
Chlorobiota
GGC
Ala
>SRA1030639
SRR035087.308359
177726
Chlorobiota
CAT
Met
>SRA1029765
SRR035087.177920
177726
Chlorobiota
CAT
Met
>SRA1031550
SRR035087.448666
118002
Chlorobiota
CAG
Leu
>SRA1030721
SRR035087.319575
118002
Chlorobiota
CAG
Leu
>SRA1032389
SRR035087.620122
177570
Chlorobiota
GGG
Pro
>SRA1031671
SRR035087.468146
177570
Chlorobiota
GGG
Pro
>SRA1029199
SRR035087.91266
155915
Chlorobiota
GTC
Asp
>SRA1030160
SRR035087.235122
177626
Chlorobiota
TAC
Val
>SRA1030047
SRR035087.220738
177626
Chlorobiota
TAC
Val
>SRA1031878
SRR035087.503017
282373
Chlorobiota
CCC
Gly
>SRA1030640
SRR035087.308359
282373
Chlorobiota
CCC
Gly
>SRA1029766
SRR035087.177920
282373
Chlorobiota
CCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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