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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
168 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1012879
SRR020493.465484
46946
Cyanobacteriota
TAA
Leu
>SRA1012812
SRR020493.439664
46946
Cyanobacteriota
TAA
Leu
>SRA1012716
SRR020493.404993
46946
Cyanobacteriota
TAA
Leu
>SRA1012367
SRR020493.286709
46946
Cyanobacteriota
TAA
Leu
>SRA1012144
SRR020493.195538
46946
Cyanobacteriota
TAA
Leu
>SRA1012126
SRR020493.189038
46946
Cyanobacteriota
TAA
Leu
>SRA1012121
SRR020493.186719
46946
Cyanobacteriota
TAA
Leu
>SRA1011980
SRR020493.142225
46946
Cyanobacteriota
TAA
Leu
>SRA1011750
SRR020493.67031
46946
Cyanobacteriota
TAA
Leu
>SRA1012875
SRR020493.464445
185187
Cyanobacteriota
CCG
Arg
>SRA1012640
SRR020493.379883
177109
Cyanobacteriota
CCT
Arg
>SRA1012605
SRR020493.367690
177109
Cyanobacteriota
CCT
Arg
>SRA1012398
SRR020493.295478
177109
Cyanobacteriota
CCT
Arg
>SRA1012236
SRR020493.226697
177109
Cyanobacteriota
CCT
Arg
>SRA1012132
SRR020493.192583
177109
Cyanobacteriota
CCT
Arg
>SRA1012110
SRR020493.182864
177109
Cyanobacteriota
CCT
Arg
>SRA1012067
SRR020493.171566
177109
Cyanobacteriota
CCT
Arg
>SRA1011933
SRR020493.125088
177109
Cyanobacteriota
CCT
Arg
>SRA1011899
SRR020493.115876
177109
Cyanobacteriota
CCT
Arg
>SRA1011880
SRR020493.105120
177109
Cyanobacteriota
CCT
Arg
>SRA1011823
SRR020493.87878
177109
Cyanobacteriota
CCT
Arg
>SRA1012897
SRR020493.474743
118720
Cyanobacteriota
CAA
Leu
>SRA1012810
SRR020493.439301
118720
Cyanobacteriota
CAA
Leu
>SRA1012582
SRR020493.360121
118720
Cyanobacteriota
CAA
Leu
>SRA1012530
SRR020493.341840
118720
Cyanobacteriota
CAA
Leu
>SRA1012313
SRR020493.261491
118720
Cyanobacteriota
CAA
Leu
>SRA1012290
SRR020493.247105
118720
Cyanobacteriota
CAA
Leu
>SRA1012270
SRR020493.237565
118720
Cyanobacteriota
CAA
Leu
>SRA1012106
SRR020493.181343
118720
Cyanobacteriota
CAA
Leu
>SRA1012096
SRR020493.179355
118720
Cyanobacteriota
CAA
Leu
>SRA1012004
SRR020493.151024
118720
Cyanobacteriota
CAA
Leu
>SRA1011896
SRR020493.115398
118720
Cyanobacteriota
CAA
Leu
>SRA1011881
SRR020493.105741
118720
Cyanobacteriota
CAA
Leu
>SRA1011725
SRR020493.58002
118720
Cyanobacteriota
CAA
Leu
>SRA1011702
SRR020493.48859
118720
Cyanobacteriota
CAA
Leu
>SRA1011987
SRR020493.144242
480623
Cyanobacteriota
TCC
Gly
>SRA1011923
SRR020493.121721
480623
Cyanobacteriota
TCC
Gly
>SRA1011720
SRR020493.56361
480623
Cyanobacteriota
TCC
Gly
>SRA1011680
SRR020493.42857
480623
Cyanobacteriota
TCC
Gly
>SRA1012929
SRR020493.486658
480623
Cyanobacteriota
TCC
Gly
>SRA1012874
SRR020493.464275
480623
Cyanobacteriota
TCC
Gly
>SRA1012690
SRR020493.397239
480623
Cyanobacteriota
TCC
Gly
>SRA1012333
SRR020493.272463
480623
Cyanobacteriota
TCC
Gly
>SRA1012327
SRR020493.268689
480623
Cyanobacteriota
TCC
Gly
>SRA1012226
SRR020493.221651
480623
Cyanobacteriota
TCC
Gly
>SRA1012192
SRR020493.209977
480623
Cyanobacteriota
TCC
Gly
>SRA1012056
SRR020493.169041
480623
Cyanobacteriota
TCC
Gly
>SRA1012912
SRR020493.479580
177220
Cyanobacteriota
CAT
Met
>SRA1012689
SRR020493.397166
177220
Cyanobacteriota
CAT
Met
>SRA1012649
SRR020493.382070
177220
Cyanobacteriota
CAT
Met
>SRA1012407
SRR020493.300814
177220
Cyanobacteriota
CAT
Met
>SRA1012328
SRR020493.268920
177220
Cyanobacteriota
CAT
Met
>SRA1012317
SRR020493.263438
177220
Cyanobacteriota
CAT
Met
>SRA1012047
SRR020493.164376
177220
Cyanobacteriota
CAT
Met
>SRA1012015
SRR020493.155055
177220
Cyanobacteriota
CAT
Met
>SRA1011937
SRR020493.126714
177220
Cyanobacteriota
CAT
Met
>SRA1011913
SRR020493.119087
177220
Cyanobacteriota
CAT
Met
>SRA1011785
SRR020493.77800
177220
Cyanobacteriota
CAT
Met
>SRA1011722
SRR020493.57152
177220
Cyanobacteriota
CAT
Met
>SRA1011963
SRR020493.135647
283431
Cyanobacteriota
GTG
His
>SRA1011910
SRR020493.118153
283431
Cyanobacteriota
GTG
His
>SRA1011877
SRR020493.103829
283431
Cyanobacteriota
GTG
His
>SRA1011767
SRR020493.70124
283431
Cyanobacteriota
GTG
His
>SRA1011736
SRR020493.62009
283431
Cyanobacteriota
GTG
His
>SRA1011723
SRR020493.57680
283431
Cyanobacteriota
GTG
His
>SRA1011679
SRR020493.42109
283431
Cyanobacteriota
GTG
His
>SRA1011637
SRR020493.26791
283431
Cyanobacteriota
GTG
His
>SRA1011635
SRR020493.26067
283431
Cyanobacteriota
GTG
His
>SRA1011600
SRR020493.15384
283431
Cyanobacteriota
GTG
His
>SRA1011598
SRR020493.14087
283431
Cyanobacteriota
GTG
His
>SRA1012763
SRR020493.420488
283431
Cyanobacteriota
GTG
His
>SRA1012685
SRR020493.395679
283431
Cyanobacteriota
GTG
His
>SRA1012678
SRR020493.393714
283431
Cyanobacteriota
GTG
His
>SRA1012609
SRR020493.368992
283431
Cyanobacteriota
GTG
His
>SRA1012603
SRR020493.366240
283431
Cyanobacteriota
GTG
His
>SRA1012469
SRR020493.323377
283431
Cyanobacteriota
GTG
His
>SRA1012454
SRR020493.319684
283431
Cyanobacteriota
GTG
His
>SRA1012420
SRR020493.306795
283431
Cyanobacteriota
GTG
His
>SRA1012165
SRR020493.202777
283431
Cyanobacteriota
GTG
His
>SRA1012076
SRR020493.174511
283431
Cyanobacteriota
GTG
His
>SRA1012911
SRR020493.479372
401929
Cyanobacteriota
TTG
Gln
>SRA1012758
SRR020493.419327
401929
Cyanobacteriota
TTG
Gln
>SRA1012702
SRR020493.400969
401929
Cyanobacteriota
TTG
Gln
>SRA1012672
SRR020493.390083
401929
Cyanobacteriota
TTG
Gln
>SRA1012220
SRR020493.218985
401929
Cyanobacteriota
TTG
Gln
>SRA1011784
SRR020493.77794
401929
Cyanobacteriota
TTG
Gln
>SRA1011770
SRR020493.71843
401929
Cyanobacteriota
TTG
Gln
>SRA1011719
SRR020493.56223
401929
Cyanobacteriota
TTG
Gln
>SRA1011638
SRR020493.27373
401929
Cyanobacteriota
TTG
Gln
>SRA1012895
SRR020493.474064
219114
Cyanobacteriota
GGG
Pro
>SRA1012842
SRR020493.451305
219114
Cyanobacteriota
GGG
Pro
>SRA1012735
SRR020493.411020
219114
Cyanobacteriota
GGG
Pro
>SRA1012828
SRR020493.443907
30082
Cyanobacteriota
TGA
Ser
>SRA1012721
SRR020493.406834
30082
Cyanobacteriota
TGA
Ser
>SRA1012486
SRR020493.328804
30082
Cyanobacteriota
TGA
Ser
>SRA1012466
SRR020493.322711
30082
Cyanobacteriota
TGA
Ser
>SRA1012316
SRR020493.263224
30082
Cyanobacteriota
TGA
Ser
>SRA1012172
SRR020493.205244
30082
Cyanobacteriota
TGA
Ser
>SRA1012073
SRR020493.173564
30082
Cyanobacteriota
TGA
Ser
>SRA1012070
SRR020493.172796
30082
Cyanobacteriota
TGA
Ser
>SRA1012035
SRR020493.159984
30082
Cyanobacteriota
TGA
Ser
>SRA1011776
SRR020493.74811
30082
Cyanobacteriota
TGA
Ser
>SRA1012856
SRR020493.456118
285848
Cyanobacteriota
CAT
Met
>SRA1012830
SRR020493.445364
285848
Cyanobacteriota
CAT
Met
>SRA1012797
SRR020493.434080
285848
Cyanobacteriota
CAT
Met
>SRA1012725
SRR020493.407439
285848
Cyanobacteriota
CAT
Met
>SRA1012534
SRR020493.342824
285848
Cyanobacteriota
CAT
Met
>SRA1012510
SRR020493.335295
285848
Cyanobacteriota
CAT
Met
>SRA1012227
SRR020493.221827
285848
Cyanobacteriota
CAT
Met
>SRA1012202
SRR020493.213083
285848
Cyanobacteriota
CAT
Met
>SRA1012107
SRR020493.181625
285848
Cyanobacteriota
CAT
Met
>SRA1012059
SRR020493.169589
285848
Cyanobacteriota
CAT
Met
>SRA1011590
SRR020493.6796
285848
Cyanobacteriota
CAT
Met
>SRA1012876
SRR020493.464904
118688
Cyanobacteriota
TAG
Leu
>SRA1012791
SRR020493.431815
118688
Cyanobacteriota
TAG
Leu
>SRA1012748
SRR020493.416160
118688
Cyanobacteriota
TAG
Leu
>SRA1012636
SRR020493.378692
118688
Cyanobacteriota
TAG
Leu
>SRA1012558
SRR020493.351479
118688
Cyanobacteriota
TAG
Leu
>SRA1012515
SRR020493.336961
118688
Cyanobacteriota
TAG
Leu
>SRA1012477
SRR020493.324981
118688
Cyanobacteriota
TAG
Leu
>SRA1012476
SRR020493.324532
118688
Cyanobacteriota
TAG
Leu
>SRA1012250
SRR020493.231384
118688
Cyanobacteriota
TAG
Leu
>SRA1012241
SRR020493.227711
118688
Cyanobacteriota
TAG
Leu
>SRA1012171
SRR020493.204530
118688
Cyanobacteriota
TAG
Leu
>SRA1012086
SRR020493.177681
118688
Cyanobacteriota
TAG
Leu
>SRA1011612
SRR020493.19236
118688
Cyanobacteriota
TAG
Leu
>SRA1012747
SRR020493.415035
177076
Cyanobacteriota
GTC
Asp
>SRA1012729
SRR020493.409928
177076
Cyanobacteriota
GTC
Asp
>SRA1012660
SRR020493.387509
177076
Cyanobacteriota
GTC
Asp
>SRA1012549
SRR020493.349353
177076
Cyanobacteriota
GTC
Asp
>SRA1012499
SRR020493.332372
177076
Cyanobacteriota
GTC
Asp
>SRA1012323
SRR020493.266387
177076
Cyanobacteriota
GTC
Asp
>SRA1012262
SRR020493.235212
177076
Cyanobacteriota
GTC
Asp
>SRA1012260
SRR020493.234537
177076
Cyanobacteriota
GTC
Asp
>SRA1012194
SRR020493.210536
177076
Cyanobacteriota
GTC
Asp
>SRA1012085
SRR020493.177374
177076
Cyanobacteriota
GTC
Asp
>SRA1011874
SRR020493.103239
177076
Cyanobacteriota
GTC
Asp
>SRA1011796
SRR020493.81810
177076
Cyanobacteriota
GTC
Asp
>SRA1011588
SRR020493.6128
177076
Cyanobacteriota
GTC
Asp
>SRA1012918
SRR020493.481187
401934
Cyanobacteriota
GGT
Thr
>SRA1012646
SRR020493.381368
401934
Cyanobacteriota
GGT
Thr
>SRA1012461
SRR020493.321888
401934
Cyanobacteriota
GGT
Thr
>SRA1012359
SRR020493.285285
401934
Cyanobacteriota
GGT
Thr
>SRA1012347
SRR020493.279667
401934
Cyanobacteriota
GGT
Thr
>SRA1012275
SRR020493.238746
401934
Cyanobacteriota
GGT
Thr
>SRA1012264
SRR020493.236018
401934
Cyanobacteriota
GGT
Thr
>SRA1012235
SRR020493.226084
401934
Cyanobacteriota
GGT
Thr
>SRA1012162
SRR020493.201792
401934
Cyanobacteriota
GGT
Thr
>SRA1011922
SRR020493.121306
401934
Cyanobacteriota
GGT
Thr
>SRA1011810
SRR020493.84901
401934
Cyanobacteriota
GGT
Thr
>SRA1011771
SRR020493.71952
401934
Cyanobacteriota
GGT
Thr
>SRA1012641
SRR020493.380020
289209
Cyanobacteriota
TGC
Ala
>SRA1012634
SRR020493.378075
289209
Cyanobacteriota
TGC
Ala
>SRA1012598
SRR020493.364606
289209
Cyanobacteriota
TGC
Ala
>SRA1012544
SRR020493.346880
289209
Cyanobacteriota
TGC
Ala
>SRA1012457
SRR020493.320172
289209
Cyanobacteriota
TGC
Ala
>SRA1012450
SRR020493.317323
289209
Cyanobacteriota
TGC
Ala
>SRA1012103
SRR020493.180528
289209
Cyanobacteriota
TGC
Ala
>SRA1011864
SRR020493.100371
289209
Cyanobacteriota
TGC
Ala
>SRA1011817
SRR020493.86286
289209
Cyanobacteriota
TGC
Ala
>SRA1011697
SRR020493.47823
289209
Cyanobacteriota
TGC
Ala
>SRA1011669
SRR020493.38346
289209
Cyanobacteriota
TGC
Ala
>SRA1012743
SRR020493.413302
180925
Cyanobacteriota
ACG
Arg
>SRA1012501
SRR020493.332648
180925
Cyanobacteriota
ACG
Arg
>SRA1012417
SRR020493.303818
180925
Cyanobacteriota
ACG
Arg
>SRA1011820
SRR020493.87048
180925
Cyanobacteriota
ACG
Arg
>SRA1011778
SRR020493.75343
180925
Cyanobacteriota
ACG
Arg
>SRA1011746
SRR020493.66711
180925
Cyanobacteriota
ACG
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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