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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170101344
CEAR01030003
406043
Verrucomicrobiota
GCA
Cys
>WENV170101280
CEAR01027146
293125
Verrucomicrobiota
GAA
Phe
>WENV170101346
CEAR01030003
406350
Verrucomicrobiota
TGT
Thr
>WENV170100908
CEAR01010991
148006
Verrucomicrobiota
CAA
Leu
>WENV170101589
CEAR01038488
101600
Verrucomicrobiota
AAG
Leu
>WENV170100701
CEAR01000916
293105
Verrucomicrobiota
CAT
Met
>WENV170100698
CEAR01000916
405901
Verrucomicrobiota
GCC
Gly
>WENV170101770
CEAR01046651
405901
Verrucomicrobiota
GCC
Gly
>WENV170101432
CEAR01032619
483642
Verrucomicrobiota
CCC
Gly
>WENV170101843
CEAR01050062
229220
Verrucomicrobiota
CAT
Met
>WENV170101487
CEAR01034570
8960
Verrucomicrobiota
CGA
Ser
>WENV170101591
CEAR01038492
101463
Verrucomicrobiota
TAA
Leu
>WENV170100761
CEAR01003169
157427
Verrucomicrobiota
GTC
Asp
>WENV170101086
CEAR01018600
157427
Verrucomicrobiota
GTC
Asp
>WENV170101347
CEAR01030003
293079
Verrucomicrobiota
CGC
Ala
>WENV170100779
CEAR01003650
120352
Verrucomicrobiota
TAG
Leu
>WENV170101592
CEAR01038492
292636
Verrucomicrobiota
>WENV170101434
CEAR01032619
489412
Verrucomicrobiota
TCC
Gly
>WENV170100699
CEAR01000916
298263
Verrucomicrobiota
TTC
Glu
>WENV170101345
CEAR01030003
298263
Verrucomicrobiota
TTC
Glu
>WENV170100680
CEAR01000389
293069
Verrucomicrobiota
CTT
Lys
>WENV170100681
CEAR01000389
293069
Verrucomicrobiota
CTT
Lys
>WENV170100682
CEAR01000389
293069
Verrucomicrobiota
CTT
Lys
>WENV170100778
CEAR01003650
406336
Verrucomicrobiota
CCT
Arg
>WENV170101433
CEAR01032619
406369
Verrucomicrobiota
CCG
Arg
>WENV170101913
CEAR01053453
405940
Verrucomicrobiota
GGT
Thr
>WENV170100762
CEAR01003169
406044
Verrucomicrobiota
CTG
Gln
>WENV170101938
CEAR01055357
187556
Verrucomicrobiota
GGG
Pro
>WENV170100700
CEAR01000916
406037
Verrucomicrobiota
GTG
His
>WENV170100763
CEAR01003169
406360
Verrucomicrobiota
GAC
Val
>WENV170101088
CEAR01018600
187548
Verrucomicrobiota
TCT
Arg
>WENV170100679
CEAR01000389
406040
Verrucomicrobiota
CGT
Thr
>WENV170100697
CEAR01000916
57652
Verrucomicrobiota
TGA
Ser
>WENV170101773
CEAR01046651
406039
Verrucomicrobiota
CAC
Val
>WENV170100933
CEAR01011991
75458
Verrucomicrobiota
CAG
Leu
>WENV170101771
CEAR01046651
406368
Verrucomicrobiota
TTG
Gln
>WENV170101112
CEAR01020812
21159
Verrucomicrobiota
GGA
Ser
>WENV170100743
CEAR01002664
101461
Verrucomicrobiota
GTA
Tyr
>WENV170101087
CEAR01018600
293095
Verrucomicrobiota
TTT
Lys
>WENV170100678
CEAR01000389
187561
Verrucomicrobiota
CGG
Pro
>WENV170100702
CEAR01000916
406342
Verrucomicrobiota
CAT
Met
>WENV170100742
CEAR01002664
406351
Verrucomicrobiota
GTT
Asn
>WENV170101772
CEAR01046651
303305
Verrucomicrobiota
GGC
Ala
>WENV170101974
CEAR01057143
406346
Verrucomicrobiota
TAC
Val
>WENV170101593
CEAR01038492
8938
Verrucomicrobiota
GCT
Ser
>WENV170101281
CEAR01027146
186928
Verrucomicrobiota
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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