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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170022177
BCQK01001230
653532
Alphaproteobacteria
GTT
Asn
>WENV170022205
BCQK01001574
454912
Alphaproteobacteria
GGC
Ala
>WENV170022288
BCQK01003987
454504
Alphaproteobacteria
CAT
Met
>WENV170022294
BCQK01004303
47685
Alphaproteobacteria
CGA
Ser
>WENV170022307
BCQK01004572
454913
Alphaproteobacteria
CGT
Thr
>WENV170022331
BCQK01005809
454914
Alphaproteobacteria
TTT
Lys
>WENV170022340
BCQK01006002
654103
Alphaproteobacteria
GAA
Phe
>WENV170022457
BCQK01012312
452895
Alphaproteobacteria
TGC
Ala
>WENV170022526
BCQK01018132
270777
Alphaproteobacteria
CAT
Met
>WENV170022539
BCQK01018772
273797
Alphaproteobacteria
GGG
Pro
>WENV170022555
BCQK01020070
180720
Alphaproteobacteria
TAG
Leu
>WENV170022559
BCQK01020297
655167
Alphaproteobacteria
TTC
Glu
>WENV170022568
BCQK01021399
273805
Alphaproteobacteria
ACG
Arg
>WENV170022597
BCQK01024345
180507
Alphaproteobacteria
TAG
Leu
>WENV170022633
BCQK01028047
452895
Alphaproteobacteria
TGC
Ala
>WENV170022642
BCQK01029316
655361
Alphaproteobacteria
GCC
Gly
>WENV170022657
BCQK01031033
653532
Alphaproteobacteria
GTT
Asn
>WENV170022700
BCQK01037371
655358
Alphaproteobacteria
TTG
Gln
>WENV170022731
BCQK01041467
452917
Alphaproteobacteria
TAC
Val
>WENV170022737
BCQK01042992
273803
Alphaproteobacteria
CCT
Arg
>WENV170022738
BCQK01043219
275828
Alphaproteobacteria
GTC
Asp
>WENV170022739
BCQK01043219
275828
Alphaproteobacteria
GTC
Asp
>WENV170022774
BCQK01047449
274223
Alphaproteobacteria
CCG
Arg
>WENV170022794
BCQK01049784
658005
Alphaproteobacteria
GCC
Gly
>WENV170022837
BCQK01058527
274131
Alphaproteobacteria
CAT
Met
>WENV170022838
BCQK01058715
655270
Alphaproteobacteria
GAA
Phe
>WENV170022867
BCQK01064831
455363
Alphaproteobacteria
GGC
Ala
>WENV170022883
BCQK01069449
780331
Alphaproteobacteria
TCC
Gly
>WENV170022906
BCQK01075263
273797
Alphaproteobacteria
GGG
Pro
>WENV170022915
BCQK01076539
113188
Alphaproteobacteria
GAG
Leu
>WENV170022918
BCQK01076724
655166
Alphaproteobacteria
CAC
Val
>WENV170022933
BCQK01080634
452917
Alphaproteobacteria
TAC
Val
>WENV170022949
BCQK01084628
180720
Alphaproteobacteria
TAG
Leu
>WENV170022953
BCQK01085186
655361
Alphaproteobacteria
GCC
Gly
>WENV170022973
BCQK01092097
653534
Alphaproteobacteria
GCC
Gly
>WENV170022974
BCQK01092778
273797
Alphaproteobacteria
GGG
Pro
>WENV170022993
BCQK01096792
780582
Alphaproteobacteria
TCC
Gly
>WENV170023029
BCQK01107479
654103
Alphaproteobacteria
GAA
Phe
>WENV170023050
BCQK01112152
655394
Alphaproteobacteria
GTT
Asn
>WENV170023056
BCQK01112716
46072
Alphaproteobacteria
GCT
Ser
>WENV170023067
BCQK01116098
275667
Alphaproteobacteria
TGG
Pro
>WENV170023072
BCQK01117911
45799
Alphaproteobacteria
GCT
Ser
>WENV170023080
BCQK01121096
654103
Alphaproteobacteria
GAA
Phe
>WENV170023107
BCQK01128559
277664
Alphaproteobacteria
GTC
Asp
>WENV170023187
BCQK01150863
273160
Alphaproteobacteria
ACG
Arg
>WENV170023194
BCQK01154983
654103
Alphaproteobacteria
GAA
Phe
>WENV170023221
BCQK01165884
46072
Alphaproteobacteria
GCT
Ser
>WENV170023229
BCQK01169997
655394
Alphaproteobacteria
GTT
Asn
>WENV170023264
BCQK01189210
452895
Alphaproteobacteria
TGC
Ala
>WENV170023266
BCQK01190364
655166
Alphaproteobacteria
CAC
Val
>WENV170023325
BCQK01223053
273803
Alphaproteobacteria
CCT
Arg
>WENV170023326
BCQK01224359
454914
Alphaproteobacteria
TTT
Lys
>WENV170023345
BCQK01232132
654103
Alphaproteobacteria
GAA
Phe
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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