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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170026505
CDTW01046675
468335
Verrucomicrobiota
CCA
Trp
>WENV170026001
CDTW01009212
469002
Verrucomicrobiota
CGC
Ala
>WENV170026027
CDTW01011431
468342
Verrucomicrobiota
>WENV170026528
CDTW01047926
228818
Verrucomicrobiota
CAA
Leu
>WENV170026116
CDTW01017820
662558
Verrucomicrobiota
GCC
Gly
>WENV170026278
CDTW01031499
662558
Verrucomicrobiota
GCC
Gly
>WENV170026358
CDTW01036337
663148
Verrucomicrobiota
CCT
Arg
>WENV170026412
CDTW01039252
663191
Verrucomicrobiota
TTG
Gln
>WENV170026007
CDTW01009704
115335
Verrucomicrobiota
CAG
Leu
>WENV170026427
CDTW01040130
662766
Verrucomicrobiota
CTG
Gln
>WENV170026021
CDTW01011006
183416
Verrucomicrobiota
TAG
Leu
>WENV170026086
CDTW01015220
662760
Verrucomicrobiota
CAC
Val
>WENV170026519
CDTW01047744
469040
Verrucomicrobiota
CAT
Met
>WENV170026228
CDTW01027501
12844
Verrucomicrobiota
GCT
Ser
>WENV170026542
CDTW01049076
286765
Verrucomicrobiota
GGG
Pro
>WENV170025948
CDTW01005082
88820
Verrucomicrobiota
TGA
Ser
>WENV170025983
CDTW01007879
468989
Verrucomicrobiota
CTT
Lys
>WENV170025982
CDTW01007879
468989
Verrucomicrobiota
CTT
Lys
>WENV170026281
CDTW01031837
242669
Verrucomicrobiota
GTC
Asp
>WENV170025989
CDTW01008323
242669
Verrucomicrobiota
GTC
Asp
>WENV170025911
CDTW01002195
663166
Verrucomicrobiota
TGT
Thr
>WENV170026335
CDTW01034678
663168
Verrucomicrobiota
GTT
Asn
>WENV170025981
CDTW01007879
662761
Verrucomicrobiota
CGT
Thr
>WENV170026518
CDTW01047744
662758
Verrucomicrobiota
GTG
His
>WENV170026264
CDTW01029512
663178
Verrucomicrobiota
GAC
Val
>WENV170026074
CDTW01014442
12872
Verrucomicrobiota
CGA
Ser
>WENV170025990
CDTW01008326
469030
Verrucomicrobiota
TTT
Lys
>WENV170026461
CDTW01042559
286752
Verrucomicrobiota
TCT
Arg
>WENV170025915
CDTW01002197
285841
Verrucomicrobiota
TGG
Pro
>WENV170025914
CDTW01002197
469466
Verrucomicrobiota
GAA
Phe
>WENV170026527
CDTW01047924
286773
Verrucomicrobiota
CGG
Pro
>WENV170026026
CDTW01011431
155675
Verrucomicrobiota
TAA
Leu
>WENV170026586
CDTW01052090
663161
Verrucomicrobiota
TAC
Val
>WENV170026137
CDTW01019052
286760
Verrucomicrobiota
CAT
Met
>WENV170026078
CDTW01014826
662765
Verrucomicrobiota
GCA
Cys
>WENV170025959
CDTW01005762
662765
Verrucomicrobiota
GCA
Cys
>WENV170026504
CDTW01046675
662614
Verrucomicrobiota
GGT
Thr
>WENV170025943
CDTW01004656
663157
Verrucomicrobiota
CAT
Met
>WENV170025912
CDTW01002197
783783
Verrucomicrobiota
CCC
Gly
>WENV170026080
CDTW01014827
663193
Verrucomicrobiota
CCG
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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