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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170044806
CDYX01019118
468335
Verrucomicrobiota
CCA
Trp
>WENV170045562
CDYX01041608
469002
Verrucomicrobiota
CGC
Ala
>WENV170045325
CDYX01035247
468342
Verrucomicrobiota
>WENV170045328
CDYX01035247
228818
Verrucomicrobiota
CAA
Leu
>WENV170044410
CDYX01007092
662558
Verrucomicrobiota
GCC
Gly
>WENV170045197
CDYX01031663
662558
Verrucomicrobiota
GCC
Gly
>WENV170045320
CDYX01035247
784158
Verrucomicrobiota
TCC
Gly
>WENV170045323
CDYX01035247
663148
Verrucomicrobiota
CCT
Arg
>WENV170045200
CDYX01031664
663191
Verrucomicrobiota
TTG
Gln
>WENV170044864
CDYX01021780
155851
Verrucomicrobiota
GTA
Tyr
>WENV170045324
CDYX01035247
156064
Verrucomicrobiota
TAA
Leu
>WENV170045402
CDYX01037435
662766
Verrucomicrobiota
CTG
Gln
>WENV170045329
CDYX01035247
183416
Verrucomicrobiota
TAG
Leu
>WENV170045199
CDYX01031663
662760
Verrucomicrobiota
CAC
Val
>WENV170044413
CDYX01007092
469040
Verrucomicrobiota
CAT
Met
>WENV170045326
CDYX01035247
12844
Verrucomicrobiota
GCT
Ser
>WENV170045177
CDYX01031278
31527
Verrucomicrobiota
GGA
Ser
>WENV170045330
CDYX01035247
286765
Verrucomicrobiota
GGG
Pro
>WENV170045198
CDYX01031663
470563
Verrucomicrobiota
GGC
Ala
>WENV170044617
CDYX01013540
88820
Verrucomicrobiota
TGA
Ser
>WENV170045106
CDYX01029096
468989
Verrucomicrobiota
CTT
Lys
>WENV170045105
CDYX01029096
468989
Verrucomicrobiota
CTT
Lys
>WENV170045104
CDYX01029096
468989
Verrucomicrobiota
CTT
Lys
>WENV170044397
CDYX01006828
468989
Verrucomicrobiota
CTT
Lys
>WENV170044395
CDYX01006828
468989
Verrucomicrobiota
CTT
Lys
>WENV170044396
CDYX01006828
468989
Verrucomicrobiota
CTT
Lys
>WENV170045401
CDYX01037435
242669
Verrucomicrobiota
GTC
Asp
>WENV170045181
CDYX01031278
242669
Verrucomicrobiota
GTC
Asp
>WENV170045561
CDYX01041608
663166
Verrucomicrobiota
TGT
Thr
>WENV170044863
CDYX01021780
663168
Verrucomicrobiota
GTT
Asn
>WENV170045103
CDYX01029096
662761
Verrucomicrobiota
CGT
Thr
>WENV170045558
CDYX01041608
155855
Verrucomicrobiota
AAG
Leu
>WENV170044412
CDYX01007092
662758
Verrucomicrobiota
GTG
His
>WENV170045327
CDYX01035247
286784
Verrucomicrobiota
ACG
Arg
>WENV170045403
CDYX01037435
663178
Verrucomicrobiota
GAC
Val
>WENV170044259
CDYX01004018
12872
Verrucomicrobiota
CGA
Ser
>WENV170045560
CDYX01041608
470561
Verrucomicrobiota
TTC
Glu
>WENV170044411
CDYX01007092
470561
Verrucomicrobiota
TTC
Glu
>WENV170045178
CDYX01031278
469030
Verrucomicrobiota
TTT
Lys
>WENV170045179
CDYX01031278
286752
Verrucomicrobiota
TCT
Arg
>WENV170045322
CDYX01035247
285841
Verrucomicrobiota
TGG
Pro
>WENV170045321
CDYX01035247
469466
Verrucomicrobiota
GAA
Phe
>WENV170045102
CDYX01029096
286773
Verrucomicrobiota
CGG
Pro
>WENV170045400
CDYX01037435
663161
Verrucomicrobiota
TAC
Val
>WENV170044865
CDYX01021780
286760
Verrucomicrobiota
CAT
Met
>WENV170045559
CDYX01041608
662765
Verrucomicrobiota
GCA
Cys
>WENV170044805
CDYX01019118
662614
Verrucomicrobiota
GGT
Thr
>WENV170044618
CDYX01013540
663157
Verrucomicrobiota
CAT
Met
>WENV170045331
CDYX01035247
783783
Verrucomicrobiota
CCC
Gly
>WENV170045180
CDYX01031278
663193
Verrucomicrobiota
CCG
Arg
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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