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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
40 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170234054
CEQK01001170
658005
Alphaproteobacteria
GCC
Gly
>WENV170234073
CEQK01003547
271268
Alphaproteobacteria
CAT
Met
>WENV170234076
CEQK01003907
780346
Alphaproteobacteria
CTG
Gln
>WENV170234098
CEQK01006542
780331
Alphaproteobacteria
TCC
Gly
>WENV170234099
CEQK01006544
655363
Alphaproteobacteria
GGT
Thr
>WENV170234102
CEQK01006780
454433
Alphaproteobacteria
TGT
Thr
>WENV170234103
CEQK01006780
455360
Alphaproteobacteria
CGC
Ala
>WENV170234110
CEQK01007310
461047
Alphaproteobacteria
CCA
Trp
>WENV170234120
CEQK01008848
180423
Alphaproteobacteria
CAA
Leu
>WENV170234123
CEQK01009025
455289
Alphaproteobacteria
TTT
Lys
>WENV170234125
CEQK01009255
274138
Alphaproteobacteria
CAT
Met
>WENV170234137
CEQK01011419
655363
Alphaproteobacteria
GGT
Thr
>WENV170234157
CEQK01014387
47093
Alphaproteobacteria
CGA
Ser
>WENV170234164
CEQK01014443
287552
Alphaproteobacteria
GAT
Ile
>WENV170234169
CEQK01015336
112839
Alphaproteobacteria
CAG
Leu
>WENV170234181
CEQK01017051
281029
Alphaproteobacteria
GGG
Pro
>WENV170234191
CEQK01018131
19999
Alphaproteobacteria
GCT
Ser
>WENV170234206
CEQK01020373
780039
Alphaproteobacteria
GCA
Cys
>WENV170234225
CEQK01024359
281026
Alphaproteobacteria
CAT
Met
>WENV170234226
CEQK01024557
273451
Alphaproteobacteria
GTG
His
>WENV170234245
CEQK01028015
274131
Alphaproteobacteria
CAT
Met
>WENV170234276
CEQK01032929
274224
Alphaproteobacteria
CAT
Met
>WENV170234282
CEQK01033702
274144
Alphaproteobacteria
GTG
His
>WENV170234302
CEQK01035442
780331
Alphaproteobacteria
TCC
Gly
>WENV170234320
CEQK01039541
663828
Alphaproteobacteria
TTC
Glu
>WENV170234321
CEQK01039541
663828
Alphaproteobacteria
TTC
Glu
>WENV170234333
CEQK01041864
655421
Alphaproteobacteria
GGT
Thr
>WENV170234334
CEQK01041864
452629
Alphaproteobacteria
GAA
Phe
>WENV170234385
CEQK01050875
655167
Alphaproteobacteria
TTC
Glu
>WENV170234404
CEQK01054228
451850
Alphaproteobacteria
TAC
Val
>WENV170234426
CEQK01058302
655365
Alphaproteobacteria
TTC
Glu
>WENV170234434
CEQK01060327
653581
Alphaproteobacteria
GCC
Gly
>WENV170234438
CEQK01061279
454512
Alphaproteobacteria
CCA
Trp
>WENV170234444
CEQK01062764
655365
Alphaproteobacteria
TTC
Glu
>WENV170234452
CEQK01064581
655361
Alphaproteobacteria
GCC
Gly
>WENV170234453
CEQK01064617
653538
Alphaproteobacteria
TTC
Glu
>WENV170234457
CEQK01065096
455289
Alphaproteobacteria
TTT
Lys
>WENV170234480
CEQK01069199
656001
Alphaproteobacteria
GCC
Gly
>WENV170234532
CEQK01079082
779636
Alphaproteobacteria
CTG
Gln
>WENV170234604
CEQK01103230
656063
Alphaproteobacteria
GAC
Val
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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